Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LL3_RS08875 Genome accession   NC_017190
Coordinates   1739193..1739624 (+) Length   143 a.a.
NCBI ID   WP_013352323.1    Uniprot ID   A0A9P1JH41
Organism   Bacillus amyloliquefaciens LL3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734193..1744624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS08855 (LL3_01857) spoVS 1734764..1735024 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LL3_RS08860 (LL3_01858) tdh 1735281..1736327 (+) 1047 WP_014470388.1 L-threonine 3-dehydrogenase -
  LL3_RS08865 (LL3_01859) - 1736343..1737518 (+) 1176 WP_013352322.1 glycine C-acetyltransferase -
  LL3_RS08870 (LL3_01860) miaB 1737661..1739190 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LL3_RS08875 (LL3_01861) ymcA 1739193..1739624 (+) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  LL3_RS08880 (LL3_01862) cotE 1739878..1740423 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  LL3_RS08885 (LL3_01863) hexA 1740539..1743124 (+) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16128.29 Da        Isoelectric Point: 5.0213

>NTDB_id=35681 LL3_RS08875 WP_013352323.1 1739193..1739624(+) (ymcA) [Bacillus amyloliquefaciens LL3]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEAIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=35681 LL3_RS08875 WP_013352323.1 1739193..1739624(+) (ymcA) [Bacillus amyloliquefaciens LL3]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGCGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
CACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923