Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   E5A72_RS08970 Genome accession   NZ_CP039025
Coordinates   1823177..1823488 (+) Length   103 a.a.
NCBI ID   WP_228202401.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978 substr. PMR-High     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1822244..1823113 1823177..1823488 flank 64


Gene organization within MGE regions


Location: 1822244..1823488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5A72_RS08965 (E5A72_08965) - 1822244..1823176 (-) 933 WP_000743271.1 IS5 family transposase -
  E5A72_RS08970 (E5A72_08970) hns 1823177..1823488 (+) 312 WP_228202401.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11802.66 Da        Isoelectric Point: 10.2103

>NTDB_id=356795 E5A72_RS08970 WP_228202401.1 1823177..1823488(+) (hns) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MKIISLKKPLQIGLCNKAIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAEETWTG
RGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 312 bp        

>NTDB_id=356795 E5A72_RS08970 WP_228202401.1 1823177..1823488(+) (hns) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
TTGAAAATTATATCGCTGAAAAAGCCTTTACAGATAGGTTTGTGCAACAAAGCCATTGCAAGCAAAAAAGATCAAGCAAT
CGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTCTAGAATTTGGCGCTC
AAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAAGAGACTTGGACTGGT
CGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(16-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

82.524

0.825

Multiple sequence alignment