Detailed information NTG0356770

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GQF94_RS09415
• Genome accession: NZ_CP047002
• Coordinates: 1948545..1949537 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain J-8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1943545..1954537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQF94_RS09390 (GQF94_09365)	ygbN	1944200..1945564 (+)	1365	WP_000104439.1	GntP family transporter	-
GQF94_RS09395 (GQF94_09370)	-	1945603..1945839 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GQF94_RS09400 (GQF94_09375)	-	1945850..1947277 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GQF94_RS09405 (GQF94_09380)	-	1947277..1947870 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GQF94_RS09410 (GQF94_09385)	-	1948017..1948424 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
GQF94_RS09415 (GQF94_09390)	rpoS	1948545..1949537 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GQF94_RS09420 (GQF94_09395)	nlpD	1949600..1950694 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GQF94_RS09425 (GQF94_09400)	pcm	1950879..1951505 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GQF94_RS09430 (GQF94_09405)	surE	1951499..1952260 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GQF94_RS09435 (GQF94_09410)	truD	1952241..1953290 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
GQF94_RS09440 (GQF94_09415)	ispF	1953287..1953766 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GQF94_RS09445 (GQF94_09420)	ispD	1953766..1954476 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=356770 GQF94_RS09415 WP_000081550.1 1948545..1949537(-) (rpoS) [Escherichia coli strain J-8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=356770 GQF94_RS09415 WP_000081550.1 1948545..1949537(-) (rpoS) [Escherichia coli strain J-8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715