Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GQF94_RS06020 Genome accession   NZ_CP047002
Coordinates   1219026..1220453 (+) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain J-8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1214026..1225453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQF94_RS05980 (GQF94_05960) yeeW 1214210..1214404 (+) 195 WP_000988600.1 DUF5983 family protein -
  GQF94_RS05985 (GQF94_05965) - 1214450..1214530 (+) 81 Protein_1187 hypothetical protein -
  GQF94_RS05990 (GQF94_05970) - 1214819..1214965 (-) 147 Protein_1188 transposase domain-containing protein -
  GQF94_RS05995 (GQF94_05975) - 1215019..1215201 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GQF94_RS06000 (GQF94_05980) tmaR 1215302..1215631 (-) 330 WP_000450409.1 DUF496 family protein -
  GQF94_RS06005 (GQF94_05985) yeeA 1215803..1216861 (-) 1059 WP_001200890.1 FUSC family protein -
  GQF94_RS06010 (GQF94_05990) sbmC 1217059..1217532 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  GQF94_RS06015 (GQF94_05995) dacD 1217651..1218817 (-) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GQF94_RS06020 (GQF94_06000) sbcB 1219026..1220453 (+) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  GQF94_RS06025 (GQF94_06005) tsuB 1220496..1220723 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GQF94_RS06030 (GQF94_06010) tsuA 1220737..1221795 (-) 1059 WP_024193414.1 thiosulfate utilization transporter TsuA/YeeE -
  GQF94_RS06035 (GQF94_06015) plaP 1221974..1223332 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GQF94_RS06040 (GQF94_06020) yoeI 1223322..1223384 (-) 63 WP_010723108.1 membrane protein YoeI -
  GQF94_RS06045 (GQF94_06025) yeeY 1223599..1224528 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GQF94_RS06050 (GQF94_06030) yeeZ 1224574..1225398 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=356758 GQF94_RS06020 WP_001618667.1 1219026..1220453(+) (sbcB) [Escherichia coli strain J-8]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=356758 GQF94_RS06020 WP_001618667.1 1219026..1220453(+) (sbcB) [Escherichia coli strain J-8]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAAGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585