Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GQS52_RS24150 Genome accession   NZ_CP046907
Coordinates   5477829..5479754 (+) Length   641 a.a.
NCBI ID   WP_182315506.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5472829..5484754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS24130 (GQS52_24090) - 5473142..5473765 (+) 624 WP_259370943.1 pyridoxamine 5'-phosphate oxidase family protein -
  GQS52_RS24135 (GQS52_24095) - 5473873..5475261 (-) 1389 WP_182315501.1 MFS transporter -
  GQS52_RS24140 (GQS52_24100) - 5475355..5475963 (+) 609 WP_182315503.1 TetR/AcrR family transcriptional regulator -
  GQS52_RS24145 (GQS52_24105) rcrP 5476096..5477829 (+) 1734 WP_182315505.1 ABC transporter ATP-binding protein Regulator
  GQS52_RS24150 (GQS52_24110) rcrQ 5477829..5479754 (+) 1926 WP_182315506.1 ABC transporter ATP-binding protein Regulator
  GQS52_RS24155 (GQS52_24115) - 5480009..5480779 (+) 771 WP_182315508.1 DUF2071 domain-containing protein -
  GQS52_RS24160 (GQS52_24120) - 5480904..5481677 (-) 774 WP_182315510.1 GNAT family N-acetyltransferase -
  GQS52_RS24165 (GQS52_24125) - 5481761..5483050 (-) 1290 WP_182315512.1 MFS transporter -
  GQS52_RS24170 (GQS52_24130) - 5483133..5483804 (+) 672 WP_182315514.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69235.53 Da        Isoelectric Point: 5.4426

>NTDB_id=356741 GQS52_RS24150 WP_182315506.1 5477829..5479754(+) (rcrQ) [Streptomyces sp. SCUT-3]
MAGPMGRPGLGAPDQRSMDFKGSGRRLVAQFAPERATLYGMLAAVVLSVALSVAGPMVLGRATDLVFAGLVGQEMPPGAS
REQVLESMRGRGETDVADMLSGLDFTPGRGIDFGAVGAVLLTALAAFLVAGLLMAVATRLSNRAINRTVFRMREDLRAKL
ARLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTLGQLVNSLLTIVGVLVMMFWISPLLALVALVTVPLSALVATRVGKR
AQPQFVQQWRTTGRLNAHIEEMYTGHTLVKVFGRQEESAAAFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERLFELLDAQEQDPDPVPAERPRELRGRVVLEK
VSFRYDPDKPLLEDLSLTVEPGQTVAVVGPTGAGKTTLVNLLMRFYEVTGGRILLDGVDTARMTRDELRSGIGMVLQDTW
LFGGTIAENIAYGARGEVTREQIEEAARAAHADHFVRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQEAMARLARGRTSFVIAHRLSTIRHADTILVMENGSIVEQGTHEQLLAAQGAYARLYEAQFTRAATEA
G

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=356741 GQS52_RS24150 WP_182315506.1 5477829..5479754(+) (rcrQ) [Streptomyces sp. SCUT-3]
ATGGCGGGGCCCATGGGACGGCCGGGCCTCGGCGCCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCCGGCAGGCGGCT
GGTCGCGCAGTTCGCGCCCGAGCGGGCCACGCTGTACGGCATGCTCGCCGCCGTCGTGCTCAGCGTCGCGCTCTCCGTCG
CCGGGCCCATGGTCCTGGGCCGGGCGACCGACCTGGTCTTCGCCGGCCTGGTCGGGCAGGAGATGCCCCCGGGGGCGAGC
AGGGAACAGGTCCTGGAGTCCATGCGCGGGCGCGGCGAGACGGACGTCGCGGACATGCTGTCCGGACTGGACTTCACACC
CGGCCGGGGCATCGACTTCGGCGCCGTGGGCGCCGTCCTGCTGACCGCGCTGGCGGCCTTCCTGGTGGCCGGCCTGCTCA
TGGCGGTCGCCACGCGGCTGTCGAACCGGGCGATCAACCGCACGGTGTTCCGCATGCGCGAGGACCTCCGGGCCAAGCTG
GCGCGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACAT
CGGCCAGACGCTGCAGCAGACCCTGGGCCAGCTGGTCAACTCGCTGCTGACGATCGTCGGCGTCCTGGTGATGATGTTCT
GGATATCCCCGCTGCTGGCGCTGGTCGCACTGGTCACCGTGCCGCTGTCGGCGCTGGTGGCCACGCGCGTCGGCAAGCGG
GCGCAGCCGCAGTTCGTCCAGCAGTGGAGGACCACCGGCAGGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAC
GCTGGTGAAGGTCTTCGGACGGCAGGAGGAGTCGGCCGCGGCGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGCT
TCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTC
GTCGGCGGGCTGCGGGTCGCCTCGGGCGCCCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGCTCTTCGAACTGC
TCGACGCACAGGAGCAGGACCCCGACCCGGTGCCGGCCGAACGCCCCCGGGAGCTGCGCGGCCGCGTCGTGCTGGAGAAG
GTCTCCTTCCGCTACGACCCGGACAAGCCGCTCCTGGAGGACCTCTCCCTGACGGTCGAGCCCGGGCAGACGGTCGCCGT
CGTCGGTCCCACGGGCGCGGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCC
TGCTGGACGGCGTGGACACCGCGAGGATGACGCGCGACGAACTGCGCTCCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGGACGATCGCGGAGAACATCGCCTACGGCGCGCGGGGCGAGGTCACGCGCGAGCAGATCGAGGAGGCCGC
GCGGGCCGCCCACGCGGACCACTTCGTCCGCACCCTCCCCGACGGCTACGACACCGTGATCGACGACGAGGGAGCGGGCG
TCAGCGCGGGGGAGAAGCAGCTGATCACCATCGCCCGCGCCTTCCTGTCCGACCCGGTGATCCTGGTCCTGGACGAGGCG
ACCAGCTCGGTCGACACCCGCACCGAGGTGCTGATCCAGGAGGCGATGGCCCGGCTCGCCCGGGGCCGTACCAGCTTCGT
CATCGCGCACCGGCTCTCCACGATCCGGCACGCCGACACGATCCTGGTGATGGAGAACGGCTCCATTGTCGAACAGGGCA
CGCACGAGCAGTTGTTGGCCGCCCAGGGCGCCTACGCCCGCCTGTACGAGGCGCAGTTCACCCGGGCCGCCACCGAGGCG
GGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-562)

ABC transporter transmembrane region (ABC_membrane)

(42-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.58

96.568

0.382