Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GQS52_RS24145 Genome accession   NZ_CP046907
Coordinates   5476096..5477829 (+) Length   577 a.a.
NCBI ID   WP_182315505.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5471096..5482829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS24120 (GQS52_24080) - 5471096..5471764 (+) 669 WP_182315497.1 transcriptional regulator -
  GQS52_RS24125 (GQS52_24085) - 5471831..5473063 (+) 1233 WP_182315499.1 cytochrome P450 -
  GQS52_RS24130 (GQS52_24090) - 5473142..5473765 (+) 624 WP_259370943.1 pyridoxamine 5'-phosphate oxidase family protein -
  GQS52_RS24135 (GQS52_24095) - 5473873..5475261 (-) 1389 WP_182315501.1 MFS transporter -
  GQS52_RS24140 (GQS52_24100) - 5475355..5475963 (+) 609 WP_182315503.1 TetR/AcrR family transcriptional regulator -
  GQS52_RS24145 (GQS52_24105) rcrP 5476096..5477829 (+) 1734 WP_182315505.1 ABC transporter ATP-binding protein Regulator
  GQS52_RS24150 (GQS52_24110) rcrQ 5477829..5479754 (+) 1926 WP_182315506.1 ABC transporter ATP-binding protein Regulator
  GQS52_RS24155 (GQS52_24115) - 5480009..5480779 (+) 771 WP_182315508.1 DUF2071 domain-containing protein -
  GQS52_RS24160 (GQS52_24120) - 5480904..5481677 (-) 774 WP_182315510.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62017.65 Da        Isoelectric Point: 5.7477

>NTDB_id=356740 GQS52_RS24145 WP_182315505.1 5476096..5477829(+) (rcrP) [Streptomyces sp. SCUT-3]
MLTQLLRTRLGPYRRSLALLVLLQFLQTCATLYLPTLNADIIDNGVVRGDTGYILSSGALMIAVTVVQVVCNTGAVHYGA
RTAAALGRDLRAAVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLVVVPVLGAAVGLVVRRLRPLFRSVQERLDTVNRVLREQITGNRVIRAFVRDAHEEERFRGANADLTDVSTRAGQMLAL
MFPVVMTVVNVSSVAVLWFGAHRIDDGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PADPVRELRGRGRLEIRGAGFRYPGAEEPVLRDVDLVAGPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVGGVNVR
DLDPALLARTVGLVPQKPYLFSGTVATNLRYGNPGATDEELWHALEVAQARDFVERLEGGLDAPVSQGGTNVSGGQRQRL
AIARTLVQRPGIYLFDDSFSALDYATDAALRAALAHETAGAAVVIVAQRVSTVRDADRIVVLDGGRVVGTGRHHELMEDN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=356740 GQS52_RS24145 WP_182315505.1 5476096..5477829(+) (rcrP) [Streptomyces sp. SCUT-3]
GTGCTCACACAACTCCTGCGGACCCGCCTGGGGCCGTACAGAAGATCCCTGGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTGCGGGGGGACACCGGCTACA
TCCTGTCGTCCGGCGCGCTGATGATCGCCGTCACCGTCGTCCAGGTGGTGTGCAACACGGGCGCCGTTCATTACGGCGCG
CGCACCGCCGCGGCGCTCGGGCGCGACCTGCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCGCTTCGGGGCGCCGTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTGCAGATGCTGGCCCTCATGGCGTTCA
CCCTCATGGTGTCCGCGCCGATCATGTGCGTCGGGGGCATCGTGATGGCCCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTGGTGGTGGTGCCGGTCCTCGGTGCCGCGGTCGGCCTGGTCGTGCGGCGGCTGCGGCCGCTGTTCCGCTCCGTGCA
GGAGCGGCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
CCCACGAGGAGGAACGGTTCCGCGGCGCCAACGCCGACCTCACGGACGTCTCCACCAGGGCCGGGCAGATGCTGGCGCTG
ATGTTCCCGGTCGTGATGACGGTCGTGAACGTCTCCAGCGTCGCGGTGCTCTGGTTCGGCGCGCACCGCATCGACGACGG
CGGCATGGAGATCGGCGCGCTCACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTCCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGACAGCAGCGTCGTGCCG
CCCGCAGACCCCGTGCGGGAGCTGCGCGGCCGCGGCCGCCTGGAGATCCGCGGGGCCGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTGCTGCGCGACGTGGACCTGGTGGCCGGCCCCGGCGAGACGACCGCCGTCATCGGGTCCACGGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCCAGGCTGTTCGACGCCACGGACGGCGAGGTGCTGGTGGGCGGCGTGAACGTGCGG
GACCTCGACCCGGCGCTGCTCGCGAGGACCGTGGGCCTCGTCCCGCAGAAGCCGTACCTGTTCTCCGGCACGGTCGCCAC
GAACCTGCGGTACGGAAACCCGGGGGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCCGCGACTTCG
TCGAACGCCTCGAAGGGGGACTGGACGCGCCGGTCTCCCAGGGAGGGACGAACGTCTCCGGCGGGCAGCGGCAGCGCCTG
GCGATCGCCCGCACCCTGGTGCAGCGGCCCGGGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCCACGGA
CGCCGCGCTGCGCGCCGCGCTCGCCCACGAGACCGCGGGGGCCGCGGTCGTCATCGTCGCCCAGCGCGTGTCGACCGTGC
GCGACGCCGACCGGATCGTGGTGCTGGACGGGGGCCGGGTCGTCGGCACCGGGCGCCACCACGAGCTGATGGAGGACAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACCGAAGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.883

90.295

0.369

Multiple sequence alignment