Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | RI02_RS11080 | Genome accession | NZ_CP039020 |
| Coordinates | 2183800..2184135 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain BA06 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2178800..2189135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI02_RS11060 (RI02_11155) | gcvT | 2179276..2180373 (-) | 1098 | WP_017367586.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RI02_RS11065 (RI02_11160) | - | 2180935..2182605 (+) | 1671 | WP_017367587.1 | DEAD/DEAH box helicase | - |
| RI02_RS11070 (RI02_11165) | - | 2182620..2183417 (+) | 798 | WP_017367588.1 | YqhG family protein | - |
| RI02_RS11075 (RI02_11170) | - | 2183602..2183766 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| RI02_RS11080 (RI02_11175) | sinR | 2183800..2184135 (+) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| RI02_RS11085 (RI02_11180) | tasA | 2184203..2185003 (-) | 801 | WP_008342195.1 | biofilm matrix protein TasA | - |
| RI02_RS11090 (RI02_11185) | sipW | 2185062..2185634 (-) | 573 | WP_017357979.1 | signal peptidase I SipW | - |
| RI02_RS11095 (RI02_11190) | tapA | 2185685..2186212 (-) | 528 | WP_017367589.1 | amyloid fiber anchoring/assembly protein TapA | - |
| RI02_RS11100 (RI02_11195) | - | 2186465..2186791 (+) | 327 | WP_017367590.1 | DUF3889 domain-containing protein | - |
| RI02_RS11105 (RI02_11200) | - | 2186827..2187015 (-) | 189 | WP_017367591.1 | YqzE family protein | - |
| RI02_RS11110 (RI02_11205) | - | 2187076..2187459 (-) | 384 | WP_017357982.1 | competence type IV pilus minor pilin ComGG | - |
| RI02_RS11115 (RI02_11210) | comGF | 2187456..2187953 (-) | 498 | WP_017367592.1 | competence type IV pilus minor pilin ComGF | - |
| RI02_RS11120 (RI02_11215) | comGE | 2187895..2188209 (-) | 315 | WP_017367593.1 | competence type IV pilus minor pilin ComGE | - |
| RI02_RS11125 (RI02_11220) | comGD | 2188193..2188639 (-) | 447 | WP_017367594.1 | competence type IV pilus minor pilin ComGD | - |
| RI02_RS11130 (RI02_11225) | comGC | 2188632..2188925 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=356726 RI02_RS11080 WP_017357978.1 2183800..2184135(+) (sinR) [Bacillus altitudinis strain BA06]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=356726 RI02_RS11080 WP_017357978.1 2183800..2184135(+) (sinR) [Bacillus altitudinis strain BA06]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |