Detailed information NTG0356723

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GQS52_RS15955
• Genome accession: NZ_CP046907
• Coordinates: 3590703..3591680 (+)
• Length: 325 a.a.
• NCBI ID: WP_182314072.1
• Uniprot ID: -
• Organism: Streptomyces sp. SCUT-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3585703..3596680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQS52_RS15935 (GQS52_15905)	-	3586129..3587598 (+)	1470	WP_182314070.1	NAD(P)/FAD-dependent oxidoreductase	-
GQS52_RS15940 (GQS52_15910)	-	3587634..3588140 (-)	507	WP_259370808.1	MarR family transcriptional regulator	-
GQS52_RS15945 (GQS52_15915)	-	3588192..3589970 (-)	1779	WP_259370809.1	FUSC family protein	-
GQS52_RS15950 (GQS52_15920)	-	3590085..3590417 (+)	333	WP_182314071.1	DUF3140 domain-containing protein	-
GQS52_RS15955 (GQS52_15925)	rpoS	3590703..3591680 (+)	978	WP_182314072.1	sigma-70 family RNA polymerase sigma factor	Regulator
GQS52_RS15960	-	3591938..3592108 (+)	171	WP_182314073.1	hypothetical protein	-
GQS52_RS15965 (GQS52_15930)	mscL	3592146..3592637 (-)	492	WP_182314074.1	large conductance mechanosensitive channel protein MscL	-
GQS52_RS15970 (GQS52_15935)	cpaB	3592688..3593386 (-)	699	WP_259370810.1	Flp pilus assembly protein CpaB	-
GQS52_RS15975 (GQS52_15940)	-	3593866..3594714 (-)	849	WP_182314075.1	S-methyl-5'-thioadenosine phosphorylase	-
GQS52_RS15980 (GQS52_15945)	-	3594796..3595122 (-)	327	WP_182314076.1	FmdB family zinc ribbon protein	-
GQS52_RS15985 (GQS52_15950)	-	3595212..3596387 (-)	1176	WP_259371127.1	MFS transporter	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36568.19 Da
• Isoelectric Point: 5.0599

>NTDB_id=356723 GQS52_RS15955 WP_182314072.1 3590703..3591680(+) (rpoS) [Streptomyces sp. SCUT-3]
MATRAVARRRSDGVSNVRSRSGETADRDLVGMYLDEIARTPLLDAAQEVDLSKDLEAGLYAEQLLAEGKTSESGATEDEL
KALVAAGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNKEHGREPEPAEIAGELDTTPERVVDVLDWARDPVSLNMSVDDEGETQFGDLVED
TSAASPEESVLVMLRREELEDLIGRLDDRTASIIRSRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALVELKRMARAT
GFEAA

Nucleotide

• Length: 978 bp

>NTDB_id=356723 GQS52_RS15955 WP_182314072.1 3590703..3591680(+) (rpoS) [Streptomyces sp. SCUT-3]
ATGGCAACCCGTGCCGTCGCCCGTCGTCGATCAGACGGGGTCAGCAACGTCCGCAGCAGGAGCGGCGAGACGGCGGACCG
CGACCTGGTCGGCATGTACCTCGACGAGATCGCACGTACCCCGTTGCTGGATGCGGCGCAGGAGGTCGACCTCTCCAAGG
ACCTCGAAGCGGGCCTCTACGCCGAGCAGCTGCTCGCCGAGGGCAAGACGTCCGAATCGGGAGCGACCGAGGACGAGCTC
AAGGCCCTGGTCGCCGCAGGGGAGCGGGCCAAGGACATCTTCATCCGCTCCAACCTGCGGCTCGTGGTGGCCGTCGCCCG
CCGGTACCCGCGCAGCGGACTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGCCTGGTCCGGGCCGTGGAGAAGT
TCGACTACCGCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCCGGCAGGCCATCACGCGGTCCATCGCCGAC
CAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAACTGGGACGCATCCGCCGGGTCCAGCGCGAGTTCAACAA
GGAGCACGGGCGCGAGCCCGAGCCCGCCGAGATCGCCGGCGAACTGGACACCACCCCCGAGCGCGTCGTCGACGTGCTCG
ACTGGGCCCGCGACCCGGTCAGCCTCAACATGTCCGTCGACGACGAGGGCGAGACGCAGTTCGGGGACCTCGTCGAGGAC
ACCTCCGCCGCCTCCCCCGAGGAGTCGGTGCTGGTGATGCTGCGCCGCGAGGAACTGGAAGACCTGATCGGCCGCCTCGA
CGACCGCACCGCCTCGATCATCCGCTCCCGGTACGGGATCGAGGACGGCCGTGAGCGCACCCTCACCGAGGTGGGCAAGC
AGCACGGCCTGACCCGTGAGCGGATCCGCCAGATAGAGAAGCACGCACTCGTGGAACTGAAGAGGATGGCCCGCGCCACC
GGTTTCGAAGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

• Sigma-70 region 3 (Sigma70_r3) (173-249)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (263-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40	90.769	0.363