Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RI02_RS08520 Genome accession   NZ_CP039020
Coordinates   1695407..1695787 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BA06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1690407..1700787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI02_RS08510 (RI02_08590) - 1692130..1693038 (+) 909 WP_008343827.1 trypsin-like serine peptidase -
  RI02_RS08515 (RI02_08595) - 1693185..1695179 (+) 1995 WP_017367322.1 glycosyltransferase family 39 protein -
  RI02_RS08520 (RI02_08600) nucA/comI 1695407..1695787 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RI02_RS08525 (RI02_08605) - 1695931..1696779 (+) 849 WP_017367323.1 STAS domain-containing protein -
  RI02_RS08530 (RI02_08610) - 1696812..1697354 (-) 543 WP_017367324.1 IseA DL-endopeptidase inhibitor family protein -
  RI02_RS08535 (RI02_08615) - 1697651..1698094 (+) 444 WP_017367325.1 hypothetical protein -
  RI02_RS08540 (RI02_08620) lexA 1698142..1698762 (-) 621 WP_017367326.1 transcriptional repressor LexA -
  RI02_RS08545 (RI02_08625) yneA 1698922..1699233 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  RI02_RS08550 (RI02_08630) - 1699251..1699898 (+) 648 WP_017359583.1 YneB family resolvase-like protein -
  RI02_RS08555 (RI02_08635) - 1699968..1700198 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=356722 RI02_RS08520 WP_224559893.1 1695407..1695787(+) (nucA/comI) [Bacillus altitudinis strain BA06]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=356722 RI02_RS08520 WP_224559893.1 1695407..1695787(+) (nucA/comI) [Bacillus altitudinis strain BA06]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCAGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment