Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GQS52_RS14230 Genome accession   NZ_CP046907
Coordinates   3229460..3230863 (-) Length   467 a.a.
NCBI ID   WP_182313801.1    Uniprot ID   A0ABN3MKS1
Organism   Streptomyces sp. SCUT-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224460..3235863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS14205 (GQS52_14170) - 3224540..3224881 (-) 342 WP_182313797.1 trypco2 family protein -
  GQS52_RS14210 (GQS52_14175) - 3225231..3226103 (+) 873 WP_259370773.1 peptidoglycan DD-metalloendopeptidase family protein -
  GQS52_RS14215 (GQS52_14180) - 3226203..3227165 (-) 963 WP_182313798.1 A/G-specific adenine glycosylase -
  GQS52_RS14220 (GQS52_14185) - 3227309..3228157 (+) 849 WP_182313799.1 hypothetical protein -
  GQS52_RS14225 (GQS52_14190) disA 3228269..3229393 (-) 1125 WP_182313800.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GQS52_RS14230 (GQS52_14195) radA/sms 3229460..3230863 (-) 1404 WP_182313801.1 DNA repair protein RadA Machinery gene
  GQS52_RS14235 (GQS52_14200) - 3231324..3233021 (+) 1698 WP_182313802.1 sigma-70 family RNA polymerase sigma factor -
  GQS52_RS14240 (GQS52_14205) - 3233116..3233880 (-) 765 WP_182316446.1 hypothetical protein -
  GQS52_RS14245 (GQS52_14210) - 3234040..3234987 (+) 948 WP_182313803.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49041.07 Da        Isoelectric Point: 7.6682

>NTDB_id=356722 GQS52_RS14230 WP_182313801.1 3229460..3230863(-) (radA/sms) [Streptomyces sp. SCUT-3]
MAARTSRPSAKDRPSYRCTECGWTTAKWQGRCPECQAWGTVEEFGAPAVRTTAAGRVTAPARPIRQVDGKVATARPTGVD
ELDRVLGGGLVPGAVVLMAGEPGVGKSTLLLDVAAKAASEELPTLYVTGEESAGQVRLRADRIGALSDHLYLAAETDLSA
VLGHIDDVKPALLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
QFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVGS
EIPTPRRTTSGLETSRVSMILAVLEERGGINRIGKQDIYTATVGGVRLGEPAADLAIALALASAAGNRPLPQNLVAIGEV
GLAGEVRRVTGVQRRLSEAARLGFTQALVPPDPGKVPQGMKVTEVADIGDALRVLRQRAPRSGGSQR

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=356722 GQS52_RS14230 WP_182313801.1 3229460..3230863(-) (radA/sms) [Streptomyces sp. SCUT-3]
ATGGCTGCCCGTACCTCCCGCCCGTCCGCCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGACCACCGCGAA
GTGGCAGGGCCGCTGCCCGGAGTGCCAGGCGTGGGGGACGGTGGAGGAGTTCGGCGCCCCCGCCGTGCGGACCACCGCGG
CGGGGCGGGTGACCGCTCCCGCCCGTCCGATCCGGCAGGTGGACGGCAAGGTGGCCACCGCCCGCCCCACCGGCGTGGAC
GAGCTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGGGCGGTGGTGCTGATGGCGGGCGAGCCCGGCGTCGGCAAGTC
CACGCTGCTGCTCGACGTCGCCGCCAAGGCCGCCTCCGAGGAGCTCCCCACCCTCTACGTCACCGGCGAGGAGTCGGCCG
GCCAGGTGCGGCTGCGCGCGGACCGCATCGGCGCGCTCAGCGACCACCTCTACCTGGCGGCCGAGACCGACCTGTCGGCC
GTGCTGGGCCACATCGACGACGTCAAGCCCGCCCTGCTGGTCCTGGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGGGGCATGTCCA
CGCTGCTGGTGGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTG
CAGTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGGGTGAAGAACCGCTACGGGGCGACCGACGAGGTCGG
CTGCTTCGAACTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTGACCCGGCGCGACGAGCCGG
TCCCCGGCACCTGCCTGACGGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTGGGGTCG
GAGATCCCCACGCCGCGCCGCACCACCTCCGGCCTGGAGACCTCCCGCGTGTCGATGATCCTGGCGGTCCTGGAGGAGCG
CGGCGGGATCAACCGCATCGGCAAGCAGGACATCTACACCGCCACCGTGGGCGGCGTGCGGCTCGGCGAGCCCGCCGCCG
ACCTGGCGATCGCCCTGGCCCTGGCCAGCGCGGCCGGCAACAGGCCGCTGCCGCAGAACCTGGTGGCGATCGGCGAGGTG
GGACTCGCCGGGGAGGTGCGGCGGGTCACCGGCGTGCAGCGCCGGCTCAGCGAGGCCGCCCGGCTCGGGTTCACCCAGGC
CCTGGTGCCGCCGGATCCGGGCAAAGTACCGCAGGGCATGAAGGTCACGGAGGTGGCGGACATAGGGGACGCACTGCGGG
TACTGCGGCAGAGGGCCCCGCGTTCCGGCGGTTCGCAACGGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(373-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.053

97.216

0.428
  radA Streptococcus mitis NCTC 12261

42.762

96.146

0.411
  radA Streptococcus pneumoniae R6

42.572

96.574

0.411
  radA Streptococcus pneumoniae Rx1

42.572

96.574

0.411
  radA Streptococcus pneumoniae TIGR4

42.572

96.574

0.411
  radA Streptococcus pneumoniae D39

42.572

96.574

0.411
  radA Streptococcus mitis SK321

43.794

91.435

0.4

Multiple sequence alignment