Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RI02_RS06840 Genome accession   NZ_CP039020
Coordinates   1351050..1351328 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain BA06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346050..1356328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI02_RS06820 (RI02_06895) - 1346275..1347687 (+) 1413 WP_234717146.1 RES domain-containing protein -
  RI02_RS06825 (RI02_06905) - 1348222..1349454 (-) 1233 WP_008345134.1 aminopeptidase -
  RI02_RS06830 - 1349560..1349691 (-) 132 WP_003210922.1 protein YkpC -
  RI02_RS06835 (RI02_06910) mreBH 1349766..1350773 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  RI02_RS06840 (RI02_06915) abrB 1351050..1351328 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RI02_RS06845 (RI02_06920) - 1351473..1352762 (+) 1290 WP_008345127.1 ATP-binding protein -
  RI02_RS06850 (RI02_06925) - 1352790..1353632 (+) 843 WP_017367171.1 gamma-glutamylcyclotransferase -
  RI02_RS06855 (RI02_06930) - 1353670..1354338 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=356717 RI02_RS06840 WP_008345129.1 1351050..1351328(+) (abrB) [Bacillus altitudinis strain BA06]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=356717 RI02_RS06840 WP_008345129.1 1351050..1351328(+) (abrB) [Bacillus altitudinis strain BA06]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment