Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GQS52_RS09110 Genome accession   NZ_CP046907
Coordinates   2099075..2100133 (-) Length   352 a.a.
NCBI ID   WP_182312910.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2094075..2105133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS09095 (GQS52_09080) - 2094683..2096311 (-) 1629 WP_182312907.1 ABC transporter substrate-binding protein -
  GQS52_RS09100 (GQS52_09085) - 2096468..2097664 (+) 1197 WP_182312908.1 RNA-guided endonuclease TnpB family protein -
  GQS52_RS09105 (GQS52_09090) - 2097922..2099082 (-) 1161 WP_182312909.1 dipeptide ABC transporter ATP-binding protein -
  GQS52_RS09110 (GQS52_09095) amiE 2099075..2100133 (-) 1059 WP_182312910.1 ABC transporter ATP-binding protein Regulator
  GQS52_RS09115 (GQS52_09100) - 2100145..2101101 (-) 957 WP_182312911.1 ABC transporter permease -
  GQS52_RS09120 (GQS52_09105) - 2101094..2102023 (-) 930 WP_182312912.1 ABC transporter permease -
  GQS52_RS09125 (GQS52_09110) - 2102212..2103828 (-) 1617 WP_182312913.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38622.53 Da        Isoelectric Point: 6.9063

>NTDB_id=356711 GQS52_RS09110 WP_182312910.1 2099075..2100133(-) (amiE) [Streptomyces sp. SCUT-3]
MTTTAKTADVPAPRQDGDFEGPLLEVRDLHVEFVTRDGVAKAVNGVNYTVGAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPKGEIFFRGQDMLKMSNEERRRIRGRKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKDARARAIELMDRVR
IPAAKERVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTQGLLDSIPRLDQKGQELYAIKGLPPNLTRIPSGCAFNPRCPKAQDVCRT
DVPQLYPVTERDGAELAGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=356711 GQS52_RS09110 WP_182312910.1 2099075..2100133(-) (amiE) [Streptomyces sp. SCUT-3]
GTGACCACCACTGCCAAAACAGCGGACGTTCCCGCGCCGCGCCAGGACGGCGACTTCGAGGGCCCGCTCCTCGAGGTCCG
CGACCTGCACGTGGAGTTCGTGACCCGTGACGGGGTCGCCAAGGCCGTCAACGGCGTCAACTACACCGTCGGCGCGGGCG
AGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGGAAGTCGGTGACCGCCCAGGCGATCATGGGCATCCTCGACATGCCG
CCCGGGCGGATCCCCAAGGGCGAGATCTTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGGCGGAGGAT
CCGCGGCCGGAAGATCGCGATGATCTTCCAGGACGCGCTGTCGTCGCTGAACCCGGTGCTGAGCGTGGGCTACCAGCTCG
GCGAGATGTTCCGGGTCCACCAGGGCCTGTCCAAGAAGGACGCCAGGGCCAGGGCGATCGAGCTGATGGACCGGGTGCGG
ATCCCGGCGGCGAAGGAGCGGGTGGGCGACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAGCGCATCATGATCGCGAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTGGACGTCACCGTGCAGGCCCAGGTCA
TGGACCTGCTCGCGGAACTGCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTGGAGACCGCCCCGGTGCACGAGCTGTACAAGCGGCCCGC
GCACCCCTACACCCAGGGCCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTGACGCGCATCCCGTCCGGCTGCGCCTTCAACCCGCGCTGCCCCAAGGCGCAGGACGTCTGCCGCACG
GACGTCCCGCAGCTGTACCCCGTGACCGAACGGGACGGTGCCGAGCTGGCCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.351

84.091

0.432
  amiE Streptococcus thermophilus LMG 18311

51.195

83.239

0.426
  amiE Streptococcus thermophilus LMD-9

51.195

83.239

0.426
  oppD Streptococcus mutans UA159

47.403

87.5

0.415

Multiple sequence alignment