Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GQS52_RS06365 Genome accession   NZ_CP046907
Coordinates   1462733..1463542 (+) Length   269 a.a.
NCBI ID   WP_182316250.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457733..1468542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS06355 (GQS52_06355) - 1458727..1461612 (-) 2886 WP_182312211.1 vitamin B12-dependent ribonucleotide reductase -
  GQS52_RS06360 (GQS52_06360) nrdR 1461735..1462244 (-) 510 WP_182312213.1 transcriptional regulator NrdR -
  GQS52_RS06365 (GQS52_06365) dinR/lexA 1462733..1463542 (+) 810 WP_182316250.1 transcriptional repressor LexA Regulator
  GQS52_RS06370 (GQS52_06370) - 1463672..1465723 (-) 2052 WP_182312215.1 ATP-dependent DNA helicase -
  GQS52_RS06375 (GQS52_06375) - 1465770..1467527 (-) 1758 WP_259370624.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29447.21 Da        Isoelectric Point: 8.9358

>NTDB_id=356697 GQS52_RS06365 WP_182316250.1 1462733..1463542(+) (dinR/lexA) [Streptomyces sp. SCUT-3]
MTAQDRSHDPRGRIHEHGRERRQERFPDRPASLADTASADDGQPRPARALPGRPPGIRADSNGLTDRQRRVIEVIRDSVQ
RRGYPPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDAPHTQPADTAGKPSASYVPLVGRIAAGG
PILAEESVEDVFPLPRQLVGDGDLFLLKVVGDSMVEAAICDGDWVTVRRQPVAENGDIVAAMIDGEATVKRFRREDGHVW
LLPHNAAYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 810 bp        

>NTDB_id=356697 GQS52_RS06365 WP_182316250.1 1462733..1463542(+) (dinR/lexA) [Streptomyces sp. SCUT-3]
ATGACCGCGCAGGACCGATCCCACGACCCTCGTGGCCGCATTCACGAACACGGCCGCGAACGGCGTCAGGAGCGTTTCCC
CGACCGCCCCGCCTCCCTGGCGGACACGGCCTCCGCGGACGACGGGCAGCCCAGGCCCGCACGGGCGCTCCCCGGAAGGC
CTCCCGGGATCCGCGCGGACAGCAACGGGCTGACCGACCGCCAGCGGCGGGTCATCGAGGTGATCCGCGACTCCGTGCAG
AGGCGCGGGTACCCCCCGTCGATGCGGGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACCTCCTCGGTGGCCCACCAGCT
GATGGCCCTGGAGCGCAAGGGCTTCCTGCGCCGCGACCCGCACCGGCCCCGCGCCTACGAGGTCCGCGGCTCGGACGCGC
CCCACACCCAGCCGGCCGACACCGCGGGCAAGCCGTCCGCCTCCTACGTGCCGCTGGTGGGGCGGATCGCCGCGGGCGGC
CCGATCCTCGCCGAGGAGTCGGTCGAGGACGTCTTCCCCCTCCCCCGGCAGCTCGTCGGCGACGGCGACCTGTTCCTCCT
GAAGGTCGTCGGCGACTCCATGGTCGAAGCCGCCATCTGCGACGGCGACTGGGTGACCGTGCGGCGCCAGCCCGTCGCCG
AGAACGGCGACATCGTGGCGGCCATGATCGACGGCGAGGCCACCGTGAAGCGGTTCCGGCGCGAGGACGGCCACGTGTGG
CTGCTCCCCCACAACGCCGCCTACCAGCCGATCCCCGGCGACGACGCCACCATCCTCGGCAAGGTGGTCGCCGTACTGCG
GCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(62-125)

Peptidase S24-like (Peptidase_S24)

(151-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

78.067

0.361