Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RI02_RS00080 Genome accession   NZ_CP039020
Coordinates   12560..12850 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BA06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 7560..17850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI02_RS00040 (RI02_00040) - 7593..7922 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  RI02_RS00045 (RI02_00045) - 7935..8375 (+) 441 WP_008341898.1 YaaR family protein -
  RI02_RS00050 (RI02_00050) holB 8387..9376 (+) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  RI02_RS00055 (RI02_00055) - 9379..10206 (+) 828 WP_007496230.1 PSP1 domain-containing protein -
  RI02_RS00060 (RI02_00060) yabA 10221..10574 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  RI02_RS00065 (RI02_00065) - 10630..11373 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RI02_RS00070 (RI02_00070) - 11360..11659 (+) 300 WP_017359327.1 GIY-YIG nuclease family protein -
  RI02_RS00075 (RI02_00075) rsmI 11634..12515 (+) 882 WP_017366432.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RI02_RS00080 (RI02_00080) abrB 12560..12850 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RI02_RS00085 (RI02_00090) metG 13370..15370 (+) 2001 WP_008341884.1 methionine--tRNA ligase -
  RI02_RS00090 (RI02_00095) - 15452..16219 (+) 768 WP_017359325.1 TatD family hydrolase -
  RI02_RS00095 (RI02_00100) - 16464..17666 (+) 1203 WP_017366433.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=356693 RI02_RS00080 WP_087975202.1 12560..12850(-) (abrB) [Bacillus altitudinis strain BA06]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=356693 RI02_RS00080 WP_087975202.1 12560..12850(-) (abrB) [Bacillus altitudinis strain BA06]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment