Detailed information NTG0035667

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LL3_RS07650
• Genome accession: NC_017190
• Coordinates: 1481384..1482520 (-)
• Length: 378 a.a.
• NCBI ID: WP_014471777.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens LL3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1476384..1487520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL3_RS07615	-	1476598..1476840 (+)	243	WP_041915540.1	hypothetical protein	-
LL3_RS07620	-	1476879..1477397 (-)	519	WP_041915541.1	hypothetical protein	-
LL3_RS07625 (LL3_01601)	-	1477518..1477763 (-)	246	WP_014471770.1	helix-turn-helix domain-containing protein	-
LL3_RS21655 (LL3_01603)	-	1478275..1478412 (+)	138	WP_014471772.1	hypothetical protein	-
LL3_RS07630 (LL3_01604)	-	1478388..1478984 (+)	597	WP_014471773.1	hypothetical protein	-
LL3_RS07635 (LL3_01605)	-	1479018..1479326 (-)	309	WP_014471774.1	hypothetical protein	-
LL3_RS07640 (LL3_01606)	-	1479339..1480763 (-)	1425	WP_041915607.1	hypothetical protein	-
LL3_RS07645 (LL3_01607)	-	1480813..1481178 (+)	366	WP_041915542.1	DUF1433 domain-containing protein	-
LL3_RS21405	-	1481221..1481394 (-)	174	WP_169061491.1	hypothetical protein	-
LL3_RS07650 (LL3_01608)	rapC	1481384..1482520 (-)	1137	WP_014471777.1	RapH N-terminal domain-containing protein	Regulator
LL3_RS07655 (LL3_01609)	-	1482701..1483531 (-)	831	WP_014417674.1	SHOCT domain-containing protein	-
LL3_RS07660 (LL3_01611)	-	1483701..1486319 (-)	2619	WP_041915543.1	phage tail protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44679.04 Da
• Isoelectric Point: 4.9988

>NTDB_id=35667 LL3_RS07650 WP_014471777.1 1481384..1482520(-) (rapC) [Bacillus amyloliquefaciens LL3]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFHKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAAYKHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=35667 LL3_RS07650 WP_014471777.1 1481384..1482520(-) (rapC) [Bacillus amyloliquefaciens LL3]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAGCCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCAATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCAGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATCGG
TCTAAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCATAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGGTTAGCTGGATCCGCTCTATATAATTTAGGGATCTCTTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTCAAGGTAAATAAGAAAACTGACGGAACAGCTGCTTATAAACATGGTCTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCTCTTTACATTGACGATAATAAAGAAACACTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCTGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (222-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	48.413	100	0.484
rapF	Bacillus subtilis subsp. subtilis str. 168	44.882	100	0.452