Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   GPZ77_RS16195 Genome accession   NZ_CP046905
Coordinates   3574614..3575273 (-) Length   219 a.a.
NCBI ID   WP_158988371.1    Uniprot ID   -
Organism   Streptomyces sp. QHH-9511     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569614..3580273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 3574614..3575273 (-) 660 - - Regulator

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23463.19 Da        Isoelectric Point: 4.6221

>NTDB_id=356656 GPZ77_RS16195 WP_158988371.1 3574614..3575273(-) (vraR) [Streptomyces sp. QHH-9511]
MIRVLIVDDQMMVREGFSVLLGAMPDIEVVGETVNGREAVAQVAALRPDVVLMDIRMPELNGIDATREIVAADADAKVLV
LTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTKRLITEFAKAAQAPRAPSLSQVGELTERET
EVLVLIAQGLSNAEIADRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVQVGG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=356656 GPZ77_RS16195 WP_158988371.1 3574614..3575273(-) (vraR) [Streptomyces sp. QHH-9511]
GTGATCCGCGTACTGATCGTCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTCGGCGCCATGCCCGACAT
CGAGGTGGTCGGCGAGACGGTCAACGGACGAGAGGCGGTCGCGCAGGTCGCGGCGCTCCGACCGGACGTCGTCCTGATGG
ACATCCGGATGCCGGAACTGAACGGCATCGACGCGACCCGCGAGATCGTGGCCGCGGACGCCGACGCGAAGGTACTGGTC
CTGACGACCTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGGGCCGGGGCCTCGGGCTTCCTCCTGAAGGACGCCTC
CGCGCGCCAGCTGGCGGACGGGGTACGGGTGGTGGCGGCCGGCGAGGCGCTGCTGGCGCCGACCGTGACCAAGCGGCTGA
TCACCGAGTTCGCCAAGGCGGCCCAGGCGCCGCGGGCGCCCTCGCTGTCGCAGGTCGGGGAGTTGACCGAGCGGGAGACG
GAGGTGCTCGTGCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCGGACCGTCTGGTGGTGGCCGAGTCGACGATCAA
GACCCATGTGAGCCGGATCCTGGTGAAGCTGGGGCTCAGGGACCGGACGCAGGCGGCGGTCTTCGCGTACGAGGCGCGGC
TGGTCCAGGTCGGGGGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.186

98.174

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

40

100

0.411

Multiple sequence alignment