Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPZ77_RS16080 Genome accession   NZ_CP046905
Coordinates   3553305..3553904 (-) Length   199 a.a.
NCBI ID   WP_158988352.1    Uniprot ID   A0ABW6Y653
Organism   Streptomyces sp. QHH-9511     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3548305..3558904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recR 3553305..3553904 (-) 600 - - Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21913.28 Da        Isoelectric Point: 5.1616

>NTDB_id=356655 GPZ77_RS16080 WP_158988352.1 3553305..3553904(-) (recR) [Streptomyces sp. QHH-9511]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=356655 GPZ77_RS16080 WP_158988352.1 3553305..3553904(-) (recR) [Streptomyces sp. QHH-9511]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTGCGCCGTCTGGCGCACGCGCTCCTGGAGGTCAAGGAGAAGGTCA
GGTTCTGCGCGGTCTGCGGCAATGTGGCGCAGCAGGAGCAGTGCAACATCTGCCGTGATCCGCGCCGGGACCTGTCGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGCGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGTCCGGACGACCTGCGCATCCGCGAGCTGCTGACCCGGCTCGCGGACGGCA
CGGTCACCGAACTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCCATGGGGCTGAAGGTCACGCGTCTCGCGAGCGGTCTTCCGGTCGGCGGCGATCTCGAATACGCGGACGAGGTCACGCT
GGGCCGTGCCTTTGAGGGGCGGCGCCTGCTAGATGTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467