Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GPZ77_RS11515 Genome accession   NZ_CP046905
Coordinates   2524416..2525699 (-) Length   427 a.a.
NCBI ID   WP_158987286.1    Uniprot ID   A0ABW6YHI0
Organism   Streptomyces sp. QHH-9511     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519416..2530699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - clpX 2524416..2525699 (-) 1284 - - Regulator

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46675.60 Da        Isoelectric Point: 4.9374

>NTDB_id=356640 GPZ77_RS11515 WP_158987286.1 2524416..2525699(-) (clpX) [Streptomyces sp. QHH-9511]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPRIVKNDGRHEKSA

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=356640 GPZ77_RS11515 WP_158987286.1 2524416..2525699(-) (clpX) [Streptomyces sp. QHH-9511]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGATGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAACTCGCCGAGACGA
GCGAGGTGCGGTGGGAGGAGCTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGCGCGGGACG
GGACGACGCCATCGAACTGGCGAAGTCCAACATCCTGCTGCTCGGCCCCACCGGGTCCGGCAAGACGCTGCTCGCGCAGA
CCCTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACGGCCTCCGTGCCGCCGCAGGGCGGACGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGTCTGGAGAAGATCATCGAGTCGCGGGCGGGTGC
GAAGGGCATCGGCTTCGGGGCGACGATCCGCTCCAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTGCCGGTCATCACCTCGGTCCACAACCTCGACCGC
GAGGCCCTGCTCAAGATCCTCGTCGAGCCGCGCAACGCACTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGACCGCCCGGCCCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACGGGAGCGCGTGGCCTGC
GGGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCTCGCGTGGTCATCACG
GCGGACGTGGTGCGCAACAACGTCAACCCGACGCTGGTGCCGCGGATCGTGAAGAACGACGGACGGCACGAGAAGTCGGC
CTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.682

94.145

0.6
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.771

96.253

0.518