Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GQO96_RS10060 Genome accession   NZ_CP046898
Coordinates   2114532..2115167 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain A1429     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2109532..2120167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQO96_RS10035 (GQO96_09995) - 2109588..2110568 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  GQO96_RS10040 (GQO96_10000) kdsB 2110580..2111341 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GQO96_RS10045 (GQO96_10005) lpxK 2111351..2112361 (-) 1011 WP_032030211.1 tetraacyldisaccharide 4'-kinase -
  GQO96_RS10050 (GQO96_10010) msbA 2112364..2114091 (-) 1728 WP_001070730.1 lipid A export permease/ATP-binding protein MsbA -
  GQO96_RS10055 (GQO96_10015) - 2114088..2114516 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  GQO96_RS10060 (GQO96_10020) exbB 2114532..2115167 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GQO96_RS10065 (GQO96_10025) - 2115217..2116104 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  GQO96_RS10070 (GQO96_10030) - 2116101..2116883 (-) 783 WP_000057212.1 ParA family protein -
  GQO96_RS10075 (GQO96_10035) rsmG 2116905..2117537 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GQO96_RS10080 (GQO96_10040) murU 2117625..2118314 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GQO96_RS10085 (GQO96_10045) - 2118314..2119327 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=356590 GQO96_RS10060 WP_000264037.1 2114532..2115167(-) (exbB) [Acinetobacter baumannii strain A1429]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=356590 GQO96_RS10060 WP_000264037.1 2114532..2115167(-) (exbB) [Acinetobacter baumannii strain A1429]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCTGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment