Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | E5Q09_RS00360 | Genome accession | NZ_CP038991 |
| Coordinates | 66033..66599 (+) | Length | 188 a.a. |
| NCBI ID | WP_027480237.1 | Uniprot ID | - |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 61033..71599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q09_RS00340 | - | 63352..64140 (-) | 789 | WP_027480238.1 | APH(3') family aminoglycoside O-phosphotransferase | - |
| E5Q09_RS00345 | - | 64180..65109 (+) | 930 | WP_010886715.1 | hypothetical protein | - |
| E5Q09_RS00350 | - | 65106..65480 (+) | 375 | WP_010886716.1 | hypothetical protein | - |
| E5Q09_RS00355 | - | 65582..65944 (+) | 363 | WP_010886717.1 | hypothetical protein | - |
| E5Q09_RS00360 | ddrB | 66033..66599 (+) | 567 | WP_027480237.1 | single-stranded DNA-binding protein DdrB | Machinery gene |
| E5Q09_RS00365 | - | 66780..68717 (-) | 1938 | WP_034350791.1 | peptidylprolyl isomerase | - |
| E5Q09_RS00375 | - | 69089..69568 (+) | 480 | WP_027480236.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20830.32 Da Isoelectric Point: 9.2754
>NTDB_id=356590 E5Q09_RS00360 WP_027480237.1 66033..66599(+) (ddrB) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
MLQIEFITDLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAGNGQGRPAPQGQP
AQARPQATAARPAARPPVQPGQEEETPF
MLQIEFITDLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAGNGQGRPAPQGQP
AQARPQATAARPAARPPVQPGQEEETPF
Nucleotide
Download Length: 567 bp
>NTDB_id=356590 E5Q09_RS00360 WP_027480237.1 66033..66599(+) (ddrB) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R6]
ATGTTGCAGATTGAATTTATCACCGACCTGGGTGCGCGGGTCACGGTGAACGTGGAGCATGAAAGCCGGTTGCTGGACGT
ACAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAGAACGAGG
CCGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGAAGAGCCCCGAGGGCGAAGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTCGAAGCCGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGCGGCGC
CAAGGTCAGCGACCCGCAGCACGTGCGCGAAAAGGCCGATGGCGACATCGAATACGTCAGCCTCGCCATCTTCCGCGGTG
GCAAGCGGCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGGGAACGGTCAGGGTCGCCCGGCGCCCCAGGGACAGCCC
GCCCAGGCCCGTCCCCAGGCCACTGCCGCTCGCCCCGCCGCTCGGCCCCCGGTGCAGCCCGGTCAGGAAGAAGAAACGCC
GTTCTGA
ATGTTGCAGATTGAATTTATCACCGACCTGGGTGCGCGGGTCACGGTGAACGTGGAGCATGAAAGCCGGTTGCTGGACGT
ACAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAGAACGAGG
CCGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGAAGAGCCCCGAGGGCGAAGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTCGAAGCCGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGCGGCGC
CAAGGTCAGCGACCCGCAGCACGTGCGCGAAAAGGCCGATGGCGACATCGAATACGTCAGCCTCGCCATCTTCCGCGGTG
GCAAGCGGCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGGGAACGGTCAGGGTCGCCCGGCGCCCCAGGGACAGCCC
GCCCAGGCCCGTCCCCAGGCCACTGCCGCTCGCCCCGCCGCTCGGCCCCCGGTGCAGCCCGGTCAGGAAGAAGAAACGCC
GTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |