Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | LL3_RS06440 | Genome accession | NC_017190 |
| Coordinates | 1253829..1254965 (+) | Length | 378 a.a. |
| NCBI ID | WP_088030497.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens LL3 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1248829..1259965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL3_RS06415 (LL3_01331) | - | 1249443..1250114 (+) | 672 | WP_013351925.1 | response regulator transcription factor | - |
| LL3_RS06420 (LL3_01332) | - | 1250111..1251463 (+) | 1353 | WP_014470508.1 | HAMP domain-containing sensor histidine kinase | - |
| LL3_RS21625 | - | 1251692..1251751 (+) | 60 | WP_232469732.1 | hypothetical protein | - |
| LL3_RS06425 (LL3_01333) | - | 1251890..1252081 (+) | 192 | WP_014470507.1 | hypothetical protein | - |
| LL3_RS06430 (LL3_01334) | - | 1252249..1253013 (-) | 765 | WP_013351927.1 | sulfite exporter TauE/SafE family protein | - |
| LL3_RS06435 (LL3_01336) | - | 1253157..1253624 (-) | 468 | WP_013351928.1 | DinB family protein | - |
| LL3_RS06440 (LL3_01337) | rapC | 1253829..1254965 (+) | 1137 | WP_088030497.1 | tetratricopeptide repeat protein | Regulator |
| LL3_RS20985 (LL3_01338) | - | 1254955..1255089 (+) | 135 | WP_003154881.1 | PhrA family phosphatase inhibitor | - |
| LL3_RS06450 (LL3_01339) | - | 1255233..1256186 (+) | 954 | WP_013351930.1 | N-acetylmuramoyl-L-alanine amidase | - |
| LL3_RS06455 (LL3_01340) | - | 1256224..1256601 (-) | 378 | WP_013351931.1 | PH domain-containing protein | - |
| LL3_RS06460 (LL3_01341) | - | 1256711..1257313 (+) | 603 | WP_013351932.1 | poly-gamma-glutamate hydrolase family protein | - |
| LL3_RS06465 (LL3_01342) | - | 1257456..1258046 (-) | 591 | WP_013351933.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LL3_RS06470 (LL3_01344) | xre | 1258194..1258532 (-) | 339 | WP_013351934.1 | HTH-type transcriptional regulator Xre | - |
| LL3_RS06475 (LL3_01345) | - | 1258723..1258902 (+) | 180 | WP_013351935.1 | hypothetical protein | - |
| LL3_RS06480 (LL3_01346) | - | 1258892..1259719 (+) | 828 | WP_014470504.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 45044.33 Da Isoelectric Point: 5.0536
>NTDB_id=35659 LL3_RS06440 WP_088030497.1 1253829..1254965(+) (rapC) [Bacillus amyloliquefaciens LL3]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=35659 LL3_RS06440 WP_088030497.1 1253829..1254965(+) (rapC) [Bacillus amyloliquefaciens LL3]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCTGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTTACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCTGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTTACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
44.415 |
99.471 |
0.442 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
42.48 |
100 |
0.426 |