Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | E5Q07_RS06250 | Genome accession | NZ_CP038983 |
| Coordinates | 1243775..1244239 (+) | Length | 154 a.a. |
| NCBI ID | WP_010887875.1 | Uniprot ID | Q9RUZ8 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1238775..1249239
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q07_RS06240 | - | 1240631..1241377 (-) | 747 | WP_373969211.1 | DUF4388 domain-containing protein | - |
| E5Q07_RS06245 | - | 1241520..1243778 (+) | 2259 | WP_162177751.1 | hypothetical protein | - |
| E5Q07_RS06250 | pilV | 1243775..1244239 (+) | 465 | WP_010887875.1 | type II secretion system protein | Machinery gene |
| E5Q07_RS06255 | - | 1244240..1244800 (+) | 561 | WP_010887876.1 | type II secretion system protein | - |
| E5Q07_RS06260 | - | 1244821..1245681 (+) | 861 | WP_034350728.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| E5Q07_RS06265 | - | 1245743..1247467 (+) | 1725 | WP_027480202.1 | dynamin family protein | - |
| E5Q07_RS06270 | - | 1247543..1248454 (+) | 912 | WP_034350720.1 | cation diffusion facilitator family transporter | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16402.98 Da Isoelectric Point: 9.7879
>NTDB_id=356554 E5Q07_RS06250 WP_010887875.1 1243775..1244239(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R1]
MKDRGQSGMTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYR
FDTDVKTIPNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS
MKDRGQSGMTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYR
FDTDVKTIPNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS
Nucleotide
Download Length: 465 bp
>NTDB_id=356554 E5Q07_RS06250 WP_010887875.1 1243775..1244239(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R1]
ATGAAAGATCGTGGACAATCGGGGATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCT
GTTCGGCTGGAATCTTGTGCGAAGCATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCC
AGGCGCGCTCGCAGGCGCAGCGGGGCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGG
TTCGACACGGACGTTAAAACCATTCCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAA
CATCACTTATCAGGCACCGTACGGCGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTG
GCGATTATGAAATCAGAATCGTGGGCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA
ATGAAAGATCGTGGACAATCGGGGATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCT
GTTCGGCTGGAATCTTGTGCGAAGCATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCC
AGGCGCGCTCGCAGGCGCAGCGGGGCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGG
TTCGACACGGACGTTAAAACCATTCCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAA
CATCACTTATCAGGCACCGTACGGCGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTG
GCGATTATGAAATCAGAATCGTGGGCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |