Detailed information NTG0356542

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPY04_RS13675
• Genome accession: NZ_CP046844
• Coordinates: 2954655..2955836 (+)
• Length: 393 a.a.
• NCBI ID: WP_000136720.1
• Uniprot ID: -
• Organism: Vibrio cholerae C6706
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2949655..2960836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY04_RS13640	-	2950492..2950962 (-)	471	WP_000224703.1	Dps family protein	-
GPY04_RS13645	-	2951132..2951461 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPY04_RS13650	-	2951666..2952034 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPY04_RS13655	-	2952537..2952794 (+)	258	WP_000479993.1	hypothetical protein	-
GPY04_RS13660	-	2952911..2953540 (+)	630	WP_000062274.1	lysoplasmalogenase	-
GPY04_RS13665	-	2953589..2953855 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPY04_RS13670	rsmD	2953852..2954451 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPY04_RS13675	pilA	2954655..2955836 (+)	1182	WP_000136720.1	signal recognition particle-docking protein FtsY	Machinery gene
GPY04_RS13680	ftsE	2955885..2956559 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPY04_RS13685	ftsX	2956549..2957541 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPY04_RS13690	rpoH	2957711..2958571 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPY04_RS13695	sthA	2958773..2960173 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 43034.69 Da
• Isoelectric Point: 4.4484

>NTDB_id=356542 GPY04_RS13675 WP_000136720.1 2954655..2955836(+) (pilA) [Vibrio cholerae C6706]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETATVEPARI
VEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGE
ALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWG
ERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG
QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1182 bp

>NTDB_id=356542 GPY04_RS13675 WP_000136720.1 2954655..2955836(+) (pilA) [Vibrio cholerae C6706]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATT
GTTGAACAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGC
TGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCG
ATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAA
GCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAA
AAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCC
AAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGA
GAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGC
GAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGC
GCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGA
CAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCAC
CGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTG
ACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-170)

• SRP54-type protein, GTPase domain (SRP54) (190-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.821	76.59	0.412