Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E5Q06_RS09400 Genome accession   NZ_CP038979
Coordinates   1884914..1886134 (+) Length   406 a.a.
NCBI ID   WP_010888498.1    Uniprot ID   Q9RTA2
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879914..1891134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q06_RS09375 - 1881405..1881824 (-) 420 WP_010888492.1 organic hydroperoxide resistance protein -
  E5Q06_RS09380 - 1881930..1882682 (+) 753 WP_010888493.1 TSUP family transporter -
  E5Q06_RS09385 - 1882720..1883502 (-) 783 WP_027479797.1 DUF4388 domain-containing protein -
  E5Q06_RS09390 scpB 1883606..1884154 (-) 549 WP_010888496.1 SMC-Scp complex subunit ScpB -
  E5Q06_RS09395 - 1884151..1884843 (-) 693 WP_010888497.1 L-threonylcarbamoyladenylate synthase -
  E5Q06_RS09400 pilC 1884914..1886134 (+) 1221 WP_010888498.1 type II secretion system F family protein Machinery gene
  E5Q06_RS09405 - 1886186..1886539 (-) 354 WP_010888499.1 DUF423 domain-containing protein -
  E5Q06_RS09410 mraZ 1886818..1887246 (+) 429 WP_010888500.1 division/cell wall cluster transcriptional repressor MraZ -
  E5Q06_RS09415 rsmH 1887347..1888180 (+) 834 WP_231885331.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  E5Q06_RS09420 - 1888181..1888543 (+) 363 WP_010888502.1 hypothetical protein -
  E5Q06_RS09425 - 1888534..1889880 (+) 1347 WP_027479798.1 peptidoglycan D,D-transpeptidase FtsI family protein -
  E5Q06_RS09430 - 1889887..1890891 (-) 1005 WP_010888504.1 4Fe-4S binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44323.84 Da        Isoelectric Point: 7.3174

>NTDB_id=356537 E5Q06_RS09400 WP_010888498.1 1884914..1886134(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=356537 E5Q06_RS09400 WP_010888498.1 1884914..1886134(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RTA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

60.099

100

0.601

Multiple sequence alignment