Detailed information NTG0356529

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: E5Q06_RS03960
• Genome accession: NZ_CP038979
• Coordinates: 788575..789843 (+)
• Length: 422 a.a.
• NCBI ID: WP_227086002.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 783575..794843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5Q06_RS03945	-	784341..785057 (+)	717	WP_010887417.1	hypothetical protein	-
E5Q06_RS03950	-	785054..785713 (+)	660	WP_010887418.1	type 4a pilus biogenesis protein PilO	-
E5Q06_RS03955	-	785710..787617 (+)	1908	WP_010887419.1	hypothetical protein	-
E5Q06_RS03960	pilQ	788575..789843 (+)	1269	WP_227086002.1	type II secretion system protein GspD	Machinery gene
E5Q06_RS03965	aroC	790107..791255 (+)	1149	WP_010887421.1	chorismate synthase	-
E5Q06_RS03970	-	791263..791979 (+)	717	WP_010887422.1	shikimate kinase	-
E5Q06_RS03975	aroB	791966..793018 (+)	1053	WP_010887423.1	3-dehydroquinate synthase	-
E5Q06_RS03980	aroQ	793167..793598 (+)	432	WP_010887424.1	type II 3-dehydroquinate dehydratase	-
E5Q06_RS03985	-	793595..794572 (+)	978	WP_027479984.1	alpha/beta hydrolase	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 44190.66 Da
• Isoelectric Point: 5.4747

>NTDB_id=356529 E5Q06_RS03960 WP_227086002.1 788575..789843(+) (pilQ) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MQRIYTVRGQAADITALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVFQLVNASAEE
VKATLEGTLARDLTADSNNDVLPNVPVTATDANGNTTVVSVPNALGKTANQGTANAQAQTAQTPANTQQATLIADKRTNS
LIVRGTPEQVAQVAELVPQLDQVVPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAATFNPTQSFLGFNI
FPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLEINIPSAAGNIVRQIDYGLNLDFFSPQ
VAPDGTITLRIRGQVNQPATAITADSLPNLIDFTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAF
GEKRTEKTQSQLLVIITGTVVK

Nucleotide

• Length: 1269 bp

>NTDB_id=356529 E5Q06_RS03960 WP_227086002.1 788575..789843(+) (pilQ) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
GTGCAGCGCATCTACACCGTGCGCGGCCAGGCCGCCGACATCACGGCGCTGCTCGCTGCCCAGTACCCTACCCTGCGCGT
GACCCCGGTGGGGCAGACCGGCCAACTGGTGCTCAACGGCGCTCAGGCCCAGCTCGACACGGCGCTCGCCCTGCTCGAAC
AGGTGGACCGCCCCGCCCCGGTGGCCGAGTCCCGTACCGTTCAGCGCGTCTTCCAGCTCGTCAACGCCAGCGCTGAGGAA
GTCAAGGCGACCCTGGAAGGCACCCTGGCGCGTGACCTGACCGCCGACAGCAATAACGACGTGCTGCCCAACGTGCCCGT
CACCGCCACCGACGCCAACGGCAACACGACCGTGGTGAGCGTGCCCAACGCGCTCGGCAAGACGGCGAACCAGGGCACGG
CGAATGCTCAGGCTCAGACTGCCCAGACTCCGGCCAACACCCAGCAGGCGACCCTGATCGCCGACAAGCGCACCAACAGC
CTGATCGTGCGCGGCACGCCCGAACAGGTGGCGCAGGTGGCCGAGCTGGTGCCGCAGCTCGATCAGGTGGTGCCGCAGAT
CAACGTGCAGGTGCGGATTCAGGAGGTCAACGAGCGAGCGCTGCAATCGCTGGGCCTCAACTGGCGGGCGACCTTCGGTG
GCTTCAACGTGGCGGTCTCGGGCGGCACCGGGCTGGCGGCCACCTTCAACCCCACCCAGAGCTTCCTCGGTTTCAACATT
TTCCCGACCCTCACGGCGCTCGAAACCCAGGGCCTGACCCGGCGCGTGTACGACGGCAACGTGACCATGCAAAGCGGCCA
GCGCTCGCTGAGTGCCACGGGCGGCGCCCAGAACGCTTCGAGCGGCGCGGCGGCCAGCGTCAAGAGTGGGGGCCGACTGG
AAATCAACATCCCCTCGGCGGCGGGCAACATCGTGCGGCAGATCGATTACGGTCTCAACCTCGATTTCTTCAGCCCGCAG
GTGGCGCCCGACGGCACCATCACCCTGCGTATTCGCGGTCAGGTCAACCAGCCGGCAACGGCGATCACCGCCGACAGCCT
GCCCAACCTCATCGACTTCACCAACAGCGAAGCGCAAAGCACCATCACCTTCAAGAACGGCCAGACCATCCTGATGAGCG
GCCTGCTCGGCAGCACCGAGACCACCAACCGCAGCGGCGTGCCCTTCCTGAGCAGCCTGCCCGGTGTGGGCGCGGCCTTC
GGGGAAAAACGCACCGAGAAGACCCAGTCGCAACTGCTCGTCATCATCACCGGCACCGTCGTCAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (279-422)

• Bacterial type II/III secretion system short domain (Secretin_N) (69-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1