Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   GPY04_RS04725 Genome accession   NZ_CP046844
Coordinates   1039428..1039808 (-) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae C6706     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1034428..1044808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY04_RS04705 - 1034594..1036000 (+) 1407 WP_000545341.1 MDR family MFS transporter -
  GPY04_RS04710 - 1036156..1037670 (+) 1515 WP_000411504.1 cryptochrome/deoxyribodipyrimidine photo-lyase family protein -
  GPY04_RS04715 - 1037816..1038130 (+) 315 WP_000312387.1 multidrug efflux SMR transporter -
  GPY04_RS04720 - 1038185..1039420 (-) 1236 WP_000621946.1 methyl-accepting chemotaxis protein -
  GPY04_RS04725 pilL-C 1039428..1039808 (-) 381 WP_000045526.1 response regulator Machinery gene
  GPY04_RS04730 - 1039801..1040061 (-) 261 WP_001143862.1 hypothetical protein -
  GPY04_RS04735 - 1040051..1042324 (-) 2274 WP_001178898.1 chemotaxis protein CheA -
  GPY04_RS04740 - 1042333..1042704 (-) 372 WP_000757478.1 PleD family two-component system response regulator -
  GPY04_RS04745 - 1042704..1043549 (-) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  GPY04_RS04750 - 1043560..1044216 (-) 657 WP_000974695.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=356496 GPY04_RS04725 WP_000045526.1 1039428..1039808(-) (pilL-C) [Vibrio cholerae C6706]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=356496 GPY04_RS04725 WP_000045526.1 1039428..1039808(-) (pilL-C) [Vibrio cholerae C6706]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389