Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VEA_RS07070 Genome accession   NC_013456
Coordinates   1492365..1493771 (+) Length   468 a.a.
NCBI ID   WP_012841576.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487365..1498771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS07045 (VEA_002948) rsxB 1487899..1488495 (-) 597 WP_012841575.1 electron transport complex subunit RsxB -
  VEA_RS07050 (VEA_002949) rsxA 1488499..1489077 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  VEA_RS07065 (VEA_002950) uvrB 1490041..1492071 (+) 2031 WP_006742805.1 excinuclease ABC subunit UvrB -
  VEA_RS07070 (VEA_002951) luxO 1492365..1493771 (+) 1407 WP_012841576.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VEA_RS07075 (VEA_002952) luxU 1493768..1494112 (+) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  VEA_RS07080 (VEA_002953) - 1494225..1495121 (-) 897 WP_006742807.1 YvcK family protein -
  VEA_RS07085 (VEA_002954) moaA 1495420..1496409 (+) 990 WP_006742808.1 GTP 3',8-cyclase MoaA -
  VEA_RS07090 (VEA_002955) moaB 1496515..1497027 (+) 513 WP_012841578.1 molybdenum cofactor biosynthesis protein B -
  VEA_RS07095 (VEA_002956) moaC 1497054..1497533 (+) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  VEA_RS07100 (VEA_002957) moaD 1497530..1497787 (+) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  VEA_RS07105 (VEA_002958) moaE 1497789..1498244 (+) 456 WP_012841579.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52176.71 Da        Isoelectric Point: 6.0777

>NTDB_id=35646 VEA_RS07070 WP_012841576.1 1492365..1493771(+) (luxO) [Vibrio antiquarius]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLDYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=35646 VEA_RS07070 WP_012841576.1 1492365..1493771(+) (luxO) [Vibrio antiquarius]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTAGGTACAGGTAGGGATGCCATTGAAAGTCTTAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCGGATAACCCGGGCAATCAAAGTTATCAAGGCTTTATTGGCAGCAGCCAAACTATGCAACAGGTTTACCGTACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGCATCTTCATCACTGGTGAAAGTGGTACGGGGAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAGCTGTTTGGTCACGTGAAAGGTGCTTTTACCGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAATTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACTGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTTCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATATTCACTGTTAGACTATATGTCGCACGAAGAAGGAAAAAGCTTCGTACGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCTGGCAACGTTCGTCAGCTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCACTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATTCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.86

95.94

0.833

Multiple sequence alignment