Detailed information NTG0356428

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPY07_RS08385
• Genome accession: NZ_CP046840
• Coordinates: 1815694..1816875 (+)
• Length: 393 a.a.
• NCBI ID: WP_000136720.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain F9993
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1810694..1821875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY07_RS08350	-	1811531..1812001 (-)	471	WP_000224703.1	Dps family protein	-
GPY07_RS08355	-	1812171..1812500 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPY07_RS08360	-	1812705..1813073 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPY07_RS08365	-	1813576..1813833 (+)	258	WP_000479993.1	hypothetical protein	-
GPY07_RS08370	-	1813950..1814579 (+)	630	WP_000062274.1	lysoplasmalogenase	-
GPY07_RS08375	-	1814628..1814894 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPY07_RS08380	rsmD	1814891..1815490 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPY07_RS08385	pilA	1815694..1816875 (+)	1182	WP_000136720.1	signal recognition particle-docking protein FtsY	Machinery gene
GPY07_RS08390	ftsE	1816924..1817598 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPY07_RS08395	ftsX	1817588..1818580 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GPY07_RS08400	rpoH	1818750..1819610 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPY07_RS08405	sthA	1819812..1821212 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 43034.69 Da
• Isoelectric Point: 4.4484

>NTDB_id=356428 GPY07_RS08385 WP_000136720.1 1815694..1816875(+) (pilA) [Vibrio cholerae strain F9993]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETATVEPARI
VEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGE
ALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWG
ERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG
QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1182 bp

>NTDB_id=356428 GPY07_RS08385 WP_000136720.1 1815694..1816875(+) (pilA) [Vibrio cholerae strain F9993]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATT
GTTGAACAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGC
TGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCG
ATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAA
GCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAA
AAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCC
AAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGA
GAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGC
GAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGC
GCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGA
CAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCAC
CGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTG
ACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-170)

• SRP54-type protein, GTPase domain (SRP54) (190-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.821	76.59	0.412