Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VEA_RS04950 Genome accession   NC_013456
Coordinates   1020863..1021381 (+) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio antiquarius     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015863..1026381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS04940 (VEA_002530) gshA 1018580..1020148 (+) 1569 WP_006743272.1 glutamate--cysteine ligase -
  VEA_RS04945 (VEA_002531) - 1020212..1020778 (+) 567 WP_012841415.1 hypothetical protein -
  VEA_RS04950 (VEA_002532) luxS 1020863..1021381 (+) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  VEA_RS04955 (VEA_002533) - 1021485..1022753 (-) 1269 WP_005396696.1 CNNM domain-containing protein -
  VEA_RS04960 (VEA_002534) - 1022878..1023672 (-) 795 WP_005396694.1 inner membrane protein YpjD -
  VEA_RS04965 (VEA_002535) ffh 1023897..1025279 (+) 1383 WP_005385423.1 signal recognition particle protein -
  VEA_RS04970 (VEA_002536) rpsP 1025489..1025737 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  VEA_RS04975 (VEA_002537) rimM 1025767..1026315 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=35639 VEA_RS04950 WP_005396698.1 1020863..1021381(+) (luxS) [Vibrio antiquarius]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=35639 VEA_RS04950 WP_005396698.1 1020863..1021381(+) (luxS) [Vibrio antiquarius]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACACTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGTACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAAATCGCGAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment