Detailed information NTG0035636

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VEA_RS04815
• Genome accession: NC_013456
• Coordinates: 998224..999210 (+)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio antiquarius
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 993224..1004210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VEA_RS04780 (VEA_002509)	ftsB	993233..993514 (+)	282	WP_005380907.1	cell division protein FtsB	-
VEA_RS04785 (VEA_002510)	ispD	993516..994220 (+)	705	WP_006743298.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VEA_RS04790 (VEA_002511)	ispF	994238..994714 (+)	477	WP_012841409.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VEA_RS04795 (VEA_002512)	truD	994761..995804 (+)	1044	WP_012841410.1	tRNA pseudouridine(13) synthase TruD	-
VEA_RS04800 (VEA_002513)	surE	995804..996580 (+)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
VEA_RS04805 (VEA_002514)	-	996580..997206 (+)	627	WP_006743296.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VEA_RS04810 (VEA_002515)	-	997220..998143 (+)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
VEA_RS04815 (VEA_002516)	rpoS	998224..999210 (+)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
VEA_RS04820 (VEA_002517)	mutS	999292..1001853 (-)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
VEA_RS04825 (VEA_002518)	pncC	1001938..1002420 (+)	483	WP_012841411.1	nicotinamide-nucleotide amidase	-
VEA_RS04830 (VEA_002519)	recA	1002621..1003664 (+)	1044	WP_005393872.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=35636 VEA_RS04815 WP_005393877.1 998224..999210(+) (rpoS) [Vibrio antiquarius]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=35636 VEA_RS04815 WP_005393877.1 998224..999210(+) (rpoS) [Vibrio antiquarius]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCTCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATACAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTAAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAACCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGCGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851