Detailed information NTG0356337

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GPY01_RS12265
• Genome accession: NZ_CP046839
• Coordinates: 1698039..1699196 (-)
• Length: 385 a.a.
• NCBI ID: WP_123161488.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2011EL-1271
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693039..1704196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY01_RS12245	sthA	1693693..1695093 (+)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-
GPY01_RS12250	rpoH	1695304..1696164 (-)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GPY01_RS12255	ftsX	1696334..1697326 (-)	993	WP_000279341.1	permease-like cell division protein FtsX	-
GPY01_RS12260	ftsE	1697316..1697990 (-)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GPY01_RS12265	pilA	1698039..1699196 (-)	1158	WP_123161488.1	signal recognition particle-docking protein FtsY	Machinery gene
GPY01_RS12270	rsmD	1699399..1699998 (+)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GPY01_RS12275	-	1699995..1700261 (+)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GPY01_RS12280	-	1700300..1700929 (-)	630	WP_000062272.1	lysoplasmalogenase	-
GPY01_RS12285	-	1701046..1701303 (-)	258	WP_123161489.1	hypothetical protein	-
GPY01_RS12290	-	1701806..1702174 (-)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GPY01_RS12295	-	1702379..1702708 (+)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GPY01_RS12300	-	1702878..1703348 (+)	471	WP_000224703.1	Dps family protein	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 42113.85 Da
• Isoelectric Point: 4.5531

>NTDB_id=356337 GPY01_RS12265 WP_123161488.1 1698039..1699196(-) (pilA) [Vibrio cholerae strain 2011EL-1271]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADIEAVAIQTETALTETETETETETETATVEPARIVEQEKPTE
SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRDGEALYGLLKE
EMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVI
AQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK
LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1158 bp

>NTDB_id=356337 GPY01_RS12265 WP_123161488.1 1698039..1699196(-) (pilA) [Vibrio cholerae strain 2011EL-1271]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTATCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATATTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAAAAACCGACCGAA
AGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATATTGGCGCAGGCTTCTTTGGCCTGTTTAAAGG
CAAAAAAATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGGATACGACCAGCA
AAATTATCGCTAATTTGACCGCGAAAGCTTCTCGCCAGCAACTGCGTGATGGGGAGGCGCTGTACGGTCTGCTGAAAGAA
GAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGTTGATCGACACTGAGAAAAAACCTTACGTGATCTTGATGGT
GGGCGTGAATGGGGTGGGTAAAACCACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCAAGAAAGTGATGT
TGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAAGTGCCTGTCATC
GCTCAGCATACTGGTGCTGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGTGGGATTGACGTGGT
GATTGCGGATACCGCAGGTCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGCGCGTGATGAAGA
AGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCGGGGACCGGACAAAACGCGATCAGTCAGGCCAAA
TTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGGCGTGATTTTCGC
GATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTCCATTTGCAACAC
AAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (101-162)

• SRP54-type protein, GTPase domain (SRP54) (182-381)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.333	77.922	0.416