Detailed information NTG0356336

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal010b_RS19240
• Genome accession: NZ_CP038918
• Coordinates: 2941106..2942059 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-010b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2936106..2947059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal010b_RS14855 (Psal010b_02951)	-	2936414..2936770 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal010b_RS14860 (Psal010b_02952)	-	2936767..2938170 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal010b_RS14865 (Psal010b_02953)	-	2938290..2938850 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal010b_RS14870 (Psal010b_02954)	-	2939008..2939574 (-)	567	WP_017376236.1	hypothetical protein	-
Psal010b_RS19240	pilA	2941106..2942059 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal010b_RS14880 (Psal010b_02956)	-	2942323..2943018 (-)	696	WP_027243087.1	hypothetical protein	-
Psal010b_RS19245	-	2943059..2943193 (-)	135	Protein_2975	IS3 family transposase	-
Psal010b_RS19250 (Psal010b_02957)	-	2943476..2944303 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal010b_RS19255 (Psal010b_02958)	-	2944216..2944503 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal010b_RS14895 (Psal010b_02959)	-	2944569..2944736 (+)	168	WP_017376230.1	hypothetical protein	-
Psal010b_RS14900 (Psal010b_02960)	-	2944844..2945953 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356336 Psal010b_RS19240 WP_069971666.1 2941106..2942059(+) (pilA) [Piscirickettsia salmonis strain Psal-010b]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356336 Psal010b_RS19240 WP_069971666.1 2941106..2942059(+) (pilA) [Piscirickettsia salmonis strain Psal-010b]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517