Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY01_RS08470 Genome accession   NZ_CP046839
Coordinates   879433..880035 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 2011EL-1271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874433..885035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS08445 - 875190..875933 (+) 744 WP_001109962.1 YciK family oxidoreductase -
  GPY01_RS08450 - 876202..877161 (-) 960 WP_123161402.1 IS30 family transposase -
  GPY01_RS18980 - 877215..877484 (-) 270 WP_000301890.1 hypothetical protein -
  GPY01_RS08460 - 878496..878933 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GPY01_RS08465 - 879075..879323 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GPY01_RS08470 recR 879433..880035 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GPY01_RS08475 - 880050..880379 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GPY01_RS08480 dnaX 880450..882528 (-) 2079 WP_000120791.1 DNA polymerase III subunit gamma/tau -
  GPY01_RS08485 apt 882547..883092 (-) 546 WP_000206217.1 adenine phosphoribosyltransferase -
  GPY01_RS08490 - 883224..883622 (-) 399 WP_001880857.1 YbaN family protein -
  GPY01_RS19065 - 883622..883753 (-) 132 WP_000013199.1 hypothetical protein -
  GPY01_RS08500 - 883872..885014 (-) 1143 WP_184480081.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=356311 GPY01_RS08470 WP_001260579.1 879433..880035(-) (recR) [Vibrio cholerae strain 2011EL-1271]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=356311 GPY01_RS08470 WP_001260579.1 879433..880035(-) (recR) [Vibrio cholerae strain 2011EL-1271]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCCCTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGTCGCATTGCACATGGTGTTCCTGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCCCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44