Detailed information NTG0356293

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal008_RS18955
• Genome accession: NZ_CP038904
• Coordinates: 2946985..2947938 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-008
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2941985..2952938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal008_RS14880 (Psal008_02989)	-	2942029..2942385 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal008_RS14885 (Psal008_02990)	-	2942382..2943785 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal008_RS14890 (Psal008_02991)	-	2943905..2944465 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal008_RS14895 (Psal008_02992)	-	2944623..2945189 (-)	567	WP_017376236.1	hypothetical protein	-
Psal008_RS18955	pilA	2946985..2947938 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal008_RS14905 (Psal008_02994)	-	2948202..2948897 (-)	696	WP_027243087.1	hypothetical protein	-
Psal008_RS18960	-	2948938..2949072 (-)	135	Protein_2976	IS3 family transposase	-
Psal008_RS18965 (Psal008_02995)	-	2949355..2950182 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal008_RS18970 (Psal008_02996)	-	2950095..2950382 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal008_RS14920 (Psal008_02997)	-	2950448..2950615 (+)	168	WP_017376230.1	hypothetical protein	-
Psal008_RS14925 (Psal008_02998)	-	2950723..2951832 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356293 Psal008_RS18955 WP_069971666.1 2946985..2947938(+) (pilA) [Piscirickettsia salmonis strain Psal-008]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356293 Psal008_RS18955 WP_069971666.1 2946985..2947938(+) (pilA) [Piscirickettsia salmonis strain Psal-008]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517