Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY41_RS22395 Genome accession   NZ_CP046835
Coordinates   3067743..3068612 (+) Length   289 a.a.
NCBI ID   WP_017420475.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062743..3073612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS22380 - 3063778..3064803 (+) 1026 WP_011078910.1 ABC transporter permease subunit -
  GPY41_RS22385 - 3064805..3065848 (+) 1044 WP_038941681.1 ABC transporter permease -
  GPY41_RS22390 - 3065890..3067716 (+) 1827 WP_158124268.1 extracellular solute-binding protein -
  GPY41_RS22395 amiE 3067743..3068612 (+) 870 WP_017420475.1 ABC transporter ATP-binding protein Regulator
  GPY41_RS22400 - 3068623..3069462 (+) 840 WP_072599144.1 ABC transporter ATP-binding protein -
  GPY41_RS22405 - 3069606..3070031 (+) 426 WP_038941684.1 phosphate-starvation-inducible protein PsiE -
  GPY41_RS22410 - 3070190..3070570 (+) 381 WP_038941685.1 hypothetical protein -
  GPY41_RS22415 - 3070685..3071656 (+) 972 WP_199252182.1 DMT family transporter -
  GPY41_RS22420 - 3071724..3072590 (-) 867 WP_017420469.1 YicC/YloC family endoribonuclease -
  GPY41_RS22425 rph 3072783..3073499 (+) 717 WP_011078901.1 ribonuclease PH -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32343.51 Da        Isoelectric Point: 4.8532

>NTDB_id=356284 GPY41_RS22395 WP_017420475.1 3067743..3068612(+) (amiE) [Vibrio vulnificus strain 07-2444]
MQDDVILSVRDLEVSFTTDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGQIVNGQILYRGTDLV
TLPAEQMYAMRGDRISIIFQDPMTALNPVHTVGRQINEVLELHRPDLDKRARNEYALEMLKKVKIPLPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQQETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEY
AEIFELFDHPKHPYTERLMGLMPSLDSEPKQLIDIKPMDSRMFEVSQRS

Nucleotide


Download         Length: 870 bp        

>NTDB_id=356284 GPY41_RS22395 WP_017420475.1 3067743..3068612(+) (amiE) [Vibrio vulnificus strain 07-2444]
ATGCAGGATGATGTGATTCTGAGTGTCAGAGATCTTGAGGTCTCTTTCACCACCGATGATGGCCCAGTCAAGGTATTGCA
CGGCGTCAATTTTGACGTTCGTGCAGGACGCACTTTGGGACTGGTTGGTGAGTCTGGCAGTGGCAAAAGTGTCACTTCCA
TGTCGATCATGGGGTTGTTGCCCAAGCCTTATGGTCAGATTGTGAATGGACAAATTCTCTATCGCGGCACCGATTTGGTG
ACGCTGCCTGCTGAGCAGATGTACGCGATGCGTGGTGATCGAATCTCCATTATTTTTCAAGATCCAATGACGGCGCTTAA
TCCAGTTCACACCGTCGGTCGCCAGATTAACGAAGTCTTAGAGTTACACCGCCCTGATTTGGATAAACGCGCTCGCAACG
AGTACGCCCTTGAGATGCTGAAAAAAGTGAAAATTCCACTGCCAGAGAAGCGCCTCAATGAGTACCCGCACAACCTATCT
GGCGGGATGCGTCAGCGCGTGATGATCGCCATGGCACTGGCGTGCAAACCGGACATCTTGATCTGTGATGAGCCAACCAC
CGCGTTGGACGTGACCGTTCAAGCATCCATTTTGGAACTGATGAACGAGTTACAGCAAGAAACCGGTATGGCGATGATTT
TCATCACGCATGATCTGGGTGTGGTGGCGGAAGTGTGCGACGACGTCGCGGTCATGTACGGTGGTCGGATTGTTGAGTAC
GCGGAGATTTTTGAACTGTTTGATCATCCTAAGCACCCCTACACTGAGCGGCTGATGGGCTTAATGCCAAGCTTGGACAG
TGAGCCTAAGCAGCTCATCGACATTAAGCCGATGGATAGCCGCATGTTTGAAGTCAGTCAGAGGAGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

51.282

94.464

0.484
  amiE Streptococcus thermophilus LMD-9

51.282

94.464

0.484
  amiE Streptococcus salivarius strain HSISS4

51.282

94.464

0.484
  oppD Streptococcus mutans UA159

49.455

95.156

0.471