Detailed information NTG0356279

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal006b_RS19715
• Genome accession: NZ_CP038898
• Coordinates: 2944263..2945216 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-006b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2939263..2950216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal006b_RS14860 (Psal006b_02958)	-	2939595..2939951 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal006b_RS14865 (Psal006b_02959)	-	2939948..2941351 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal006b_RS14870 (Psal006b_02960)	-	2941471..2942031 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal006b_RS14875 (Psal006b_02961)	-	2942189..2942755 (-)	567	WP_017376236.1	hypothetical protein	-
Psal006b_RS19715	pilA	2944263..2945216 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal006b_RS14885 (Psal006b_02963)	-	2945480..2946175 (-)	696	WP_027243087.1	hypothetical protein	-
Psal006b_RS19720	-	2946216..2946350 (-)	135	Protein_2971	IS3 family transposase	-
Psal006b_RS19725 (Psal006b_02964)	-	2946633..2947460 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal006b_RS19730 (Psal006b_02965)	-	2947373..2947660 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal006b_RS14900 (Psal006b_02966)	-	2947726..2947893 (+)	168	WP_017376230.1	hypothetical protein	-
Psal006b_RS14905 (Psal006b_02967)	-	2948001..2949110 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356279 Psal006b_RS19715 WP_069971666.1 2944263..2945216(+) (pilA) [Piscirickettsia salmonis strain Psal-006b]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356279 Psal006b_RS19715 WP_069971666.1 2944263..2945216(+) (pilA) [Piscirickettsia salmonis strain Psal-006b]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517