Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPY41_RS21910 Genome accession   NZ_CP046835
Coordinates   2960811..2962646 (+) Length   611 a.a.
NCBI ID   WP_013572604.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2955811..2967646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS21895 - 2958084..2958755 (-) 672 WP_158124000.1 LysE family translocator -
  GPY41_RS21900 - 2958843..2959640 (-) 798 WP_199252179.1 AraC family transcriptional regulator -
  GPY41_RS21905 rarD 2959715..2960629 (-) 915 WP_158124002.1 EamA family transporter RarD -
  GPY41_RS21910 recQ 2960811..2962646 (+) 1836 WP_013572604.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPY41_RS21915 - 2962639..2962953 (+) 315 WP_158124003.1 DUF3630 family protein -
  GPY41_RS21920 - 2963231..2963902 (+) 672 WP_017420163.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  GPY41_RS21925 gppA 2963970..2965466 (-) 1497 WP_158124004.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  GPY41_RS21930 rhlB 2965474..2966781 (-) 1308 WP_017789577.1 ATP-dependent RNA helicase RhlB -
  GPY41_RS21935 trxA 2966893..2967219 (+) 327 WP_011078987.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69024.03 Da        Isoelectric Point: 6.9779

>NTDB_id=356277 GPY41_RS21910 WP_013572604.1 2960811..2962646(+) (recQ) [Vibrio vulnificus strain 07-2444]
MTSTLLADPSDASMTPQSVLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKHHFPHVPFMALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKPVSQVIRYLESQKGN
CGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAKADKLSNKHYDKKLFAKLRKLRKSIADEEEIPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHYG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=356277 GPY41_RS21910 WP_013572604.1 2960811..2962646(+) (recQ) [Vibrio vulnificus strain 07-2444]
ATGACTTCCACGCTGCTTGCCGACCCTTCCGATGCCTCGATGACGCCCCAAAGCGTCTTATCACAGGTGTTTGGCTATCA
GACCTTCCGTGAGGGGCAGCAGTCGGTGATCGAGGCGGCTGTTGAGGGAAAAGATAGTTTGGTGATCATGCCCACCGGTG
GCGGTAAATCGCTGTGCTATCAAATTCCTGCTCTGGTGCGTTCGGGCATTACTTTAGTGATCTCCCCTTTGATTTCGCTG
ATGAAAGATCAGGTTGACCAACTTAAAGCCAACGGTGTGGCGGCAGAATGTGTCAACTCGACCTTATCACGTGACGCTTT
ACTCAGCGTCTACAACCGCATGCACGCGGGACAGCTCAAATTGGTGTACGTTTCACCAGAGCGGGTGTTGATGCGTGACT
TTATTGAGCGGCTGGAAAATTTGCCCTTGGCGATGATTGCTGTCGATGAAGCGCACTGTATCTCTCAGTGGGGACACGAT
TTCCGCCCCGAGTACGCCGCGTTAGGGCAATTGAAGCATCATTTTCCTCACGTGCCGTTTATGGCGTTAACGGCCACGGC
AGACGACGCGACGCGCAAAGACATTTTAAGTCGCTTGCATCTTAATGAGCCTCACGTGTATCTCGGTAGTTTTGATCGCC
CCAACATTCGTTATGACCTAGTGGAGAAGCACAAGCCGGTTTCTCAAGTGATTCGCTATTTGGAAAGCCAGAAAGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGCTGACCGAGAAACTGTGCAATAACCATATTCGAGCGGC
GGGTTATCACGCGGGAATGGACGCCGATGAGCGCGCGTATGTACAGGAAGCGTTTCAACGAGATGACATCCAAATCGTCG
TGGCGACAGTGGCCTTTGGTATGGGGATCAACAAACCCAATGTGCGCTTTGTGGTGCATTTCGATATTCCACGCAATATC
GAATCGTACTACCAAGAAACAGGCAGAGCAGGGCGTGATGGCCTGCCCGCCGAAGCGATGATGCTTTACGACCCTGCAGA
CATTACTTGGTTGCGCCGCATGTTGGATGAGAAAGATGACGGCCCGCAAAAGCAAGTGGAAAGCCATAAGCTCAATGCCA
TGAGTGCGTTTGCCGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTAAACTATTTCGGTGAATACCGTGAGAAGCCTTGC
GGCAATTGCGATATTTGCTTAGATCCGCCAAAGCATTTTGATGCGACGGAAGAAGCTCGCAAAGCGTTGTCGTGCGTTTA
TCGCGTGAATCAAAGCTTTGGTATGGGCTACGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATCCGTGAACACG
GCCACGATAAGATTTCCACTTACGGTTTAGGGCGCGATCACAGCCATGATTATTGGGTGAGTATTTTCCGCCAACTGATC
CATAAAGGGCTGCTGTTTCAAAACATCACCCGTAACTCGACCTTGCAGTTAACCGAAGAAGCAAGGCCATTGCTGCGTGG
TGATATGACGTTGGAGCTGGCGGTGCCGCGTTTAGATACTGCCGCGCGCAGTGCCAAAGCCGACAAACTTTCCAACAAGC
ATTACGATAAAAAGTTGTTCGCCAAATTACGTAAGCTGCGCAAATCGATTGCCGATGAGGAAGAGATCCCACCGTATGTG
GTGTTCAGTGATGCGACGCTGATTGATATGGCCGAAATATTGCCGACCTCATATGGTGAAATGCTCGCGGTGAGTGGTGT
GGGGCAGCGCAAACTAGAAAAATACGCCGATCCGTTTTTAGATTTGATTCAGGAGCACATTACTCACTATGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

HRDC domain (HRDC)

(537-603)

DEAD/DEAH box helicase (DEAD)

(32-190)

RQC domain (RQC)

(409-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.527

96.89

0.383