Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY41_RS20890 Genome accession   NZ_CP046835
Coordinates   2746804..2747991 (-) Length   395 a.a.
NCBI ID   WP_158123939.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2741804..2752991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS20860 - 2741975..2742385 (+) 411 WP_011079172.1 flagellar basal body-associated protein FliL -
  GPY41_RS20865 glpG 2742434..2743276 (-) 843 WP_017789674.1 rhomboid family intramembrane serine protease GlpG -
  GPY41_RS20870 glpE 2743362..2743682 (-) 321 WP_011079170.1 thiosulfate sulfurtransferase GlpE -
  GPY41_RS20875 rpoH 2744117..2744974 (-) 858 WP_017420381.1 RNA polymerase sigma factor RpoH -
  GPY41_RS20880 ftsX 2745151..2746119 (-) 969 WP_158123938.1 permease-like cell division protein FtsX -
  GPY41_RS20885 ftsE 2746106..2746783 (-) 678 WP_011079167.1 cell division ATP-binding protein FtsE -
  GPY41_RS20890 pilA 2746804..2747991 (-) 1188 WP_158123939.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY41_RS20895 rsmD 2748195..2748788 (+) 594 WP_011079165.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY41_RS20900 - 2748807..2749073 (+) 267 WP_017420383.1 DUF1145 domain-containing protein -
  GPY41_RS20905 - 2749157..2749750 (-) 594 WP_026050297.1 YhgN family NAAT transporter -
  GPY41_RS20910 - 2749895..2750116 (-) 222 WP_158123940.1 YecH family metal-binding protein -
  GPY41_RS20915 - 2750193..2750813 (-) 621 WP_013570939.1 lysoplasmalogenase -
  GPY41_RS20920 - 2751845..2752213 (-) 369 WP_050987565.1 hypothetical protein -
  GPY41_RS20925 - 2752449..2752778 (+) 330 WP_039469423.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 43291.17 Da        Isoelectric Point: 4.3945

>NTDB_id=356270 GPY41_RS20890 WP_158123939.1 2746804..2747991(-) (pilA) [Vibrio vulnificus strain 07-2444]
MTEKKKRGLLSWLGFGDDDQVKQPEPAQSEEVISESDEKNVESVEPIVSQEVVEEVAVEPISESEAEEPVEVTPVVVEAP
RVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTTLKIIENLTEKASRRDLKD
GEALYGLLKEEMAEILTKVEQPLQVDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQV
WGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=356270 GPY41_RS20890 WP_158123939.1 2746804..2747991(-) (pilA) [Vibrio vulnificus strain 07-2444]
ATGACGGAAAAGAAAAAGCGCGGATTACTATCGTGGCTTGGCTTTGGTGACGATGACCAAGTAAAACAACCAGAGCCTGC
ACAATCAGAAGAGGTGATCAGCGAGTCTGACGAAAAAAACGTAGAGAGCGTTGAACCGATTGTCAGCCAAGAAGTGGTTG
AAGAGGTTGCGGTAGAGCCAATCAGCGAATCAGAAGCTGAAGAGCCCGTTGAAGTGACACCTGTGGTGGTTGAAGCGCCG
CGTGTGCAAGAACAAGAAAAACCAACAGAAAGCTTTTTTGCGCGCCTAAAACGCAGCTTGAGTCGCACGAAAGCCAATAT
CGGCGCTGGTTTCTTTGGCCTATTTAAAGGCAAGAAAATCGATGATGATCTGTTTGAAGAGCTGGAAGAACAGCTACTCG
TTGCGGATGTGGGTATGGATACCACGTTGAAAATCATCGAAAACTTAACAGAAAAAGCGTCTCGCCGTGACTTAAAAGAT
GGTGAGGCTCTGTATGGTTTGCTCAAAGAAGAGATGGCGGAGATCCTCACTAAGGTTGAGCAACCATTGCAAGTGGACAG
CAGCAAAACCCCTTACGTTATCCTGATGGTTGGGGTAAATGGCGTGGGTAAAACCACCACCATTGGTAAGTTGGCGAAAC
AGTTCCAAAATCAAGGTAAGAAAGTGATGTTGGCGGCGGGCGATACTTTCCGTGCGGCGGCTGTTGAGCAGTTGCAAGTG
TGGGGCGAGCGTAACAATGTCCCAGTGATCGCACAGCATACTGGCGCAGACAGTGCATCGGTGATTTATGATGCGATTGA
AGCCGCCAAAGCGCGTGGCGTTGATGTGGTGATCGCCGATACTGCGGGTCGCTTGCAAAACAAGAGCAACTTGATGGAAG
AGCTGCGCAAAATTGTTCGAGTGATGAAGAAAATCGACGACTCCGCGCCGCATGAAATCATGTTGACCTTGGATGCAGGC
ACTGGTCAAAACGCCATTAGCCAAGCGAAACTGTTTAGCGATGTCGCGCCGATCACTGGGATCACCTTGACCAAACTGGA
TGGCACAGCGAAAGGCGGCGTGATCTTTGCTATTGCCGATCAGTTTAACATTCCTATTCGTTACATCGGTGTAGGGGAAG
GGATTGAGGATCTCCGCCCGTTTGAAACCCAAGAATTTATCGACGCGCTATTTAGTCGAGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(192-391)

SRP54-type protein, helical bundle domain (SRP54_N)

(111-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.824

92.152

0.468