Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY41_RS16655 Genome accession   NZ_CP046835
Coordinates   1851897..1852499 (-) Length   200 a.a.
NCBI ID   WP_039545820.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1846897..1857499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS16640 - 1849518..1849865 (-) 348 WP_158123690.1 hypothetical protein -
  GPY41_RS16645 - 1850033..1850395 (+) 363 WP_158123691.1 hypothetical protein -
  GPY41_RS16650 - 1850444..1851781 (-) 1338 WP_158123692.1 IS4-like element ISVvu3 family transposase -
  GPY41_RS16655 recR 1851897..1852499 (-) 603 WP_039545820.1 recombination mediator RecR Machinery gene
  GPY41_RS16660 - 1852515..1852844 (-) 330 WP_011150874.1 YbaB/EbfC family nucleoid-associated protein -
  GPY41_RS16665 dnaX 1852922..1855114 (-) 2193 WP_158123693.1 DNA polymerase III subunit gamma/tau -
  GPY41_RS16670 apt 1855123..1855668 (-) 546 WP_011079898.1 adenine phosphoribosyltransferase -
  GPY41_RS16675 - 1855834..1856226 (-) 393 WP_263132753.1 YbaN family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21904.06 Da        Isoelectric Point: 6.2673

>NTDB_id=356238 GPY41_RS16655 WP_039545820.1 1851897..1852499(-) (recR) [Vibrio vulnificus strain 07-2444]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSHAMTEIGHCNECRTFTEEDVCHICNNPKRQEN
GLLCVVESPADIAAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDIKEVILATNPTVEGEATAHYIAEL
CREHKVDASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=356238 GPY41_RS16655 WP_039545820.1 1851897..1852499(-) (recR) [Vibrio vulnificus strain 07-2444]
ATGCGTACCAGCCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTTTGCCTGGGGTTGGCCCCAAGTCAGCACAGCG
TATGGCCTTTCATTTGTTACAGCGAGACAGAAAAGGCGGCCTGCAGCTTGCGGATGCATTAAGTCATGCCATGACGGAAA
TTGGCCACTGTAATGAGTGCCGTACTTTTACTGAAGAAGATGTTTGTCATATCTGCAACAACCCAAAACGCCAAGAAAAT
GGATTATTGTGTGTGGTCGAAAGCCCTGCCGATATCGCCGCCGTGGAAGCCACAGGACAATTTTCTGGGCGTTACTTTGT
GTTGATGGGGCATCTATCACCGCTTGATGGTATTGGACCTAGTGATATTGGCCTCGATGTCCTCGATTATCGGCTACGTC
GCGGTGATATCAAAGAAGTGATCTTAGCGACCAACCCTACCGTGGAAGGTGAAGCGACCGCGCACTACATCGCAGAGCTC
TGTCGAGAGCATAAAGTGGATGCCAGTCGAATTGCTCATGGTGTTCCTGTCGGTGGGGAGCTTGAGCTGGTGGATGGTAC
AACCTTGTCTCATTCGCTCCTCGGGCGGCACAAGCTTTTTTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435