Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VEA_RS02235 Genome accession   NC_013456
Coordinates   468715..469824 (+) Length   369 a.a.
NCBI ID   WP_006742929.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 463715..474824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS02215 (VEA_002055) rsmB 464635..465918 (-) 1284 WP_006742926.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VEA_RS02220 (VEA_002056) fmt 465999..466946 (-) 948 WP_006742927.1 methionyl-tRNA formyltransferase -
  VEA_RS02225 (VEA_002057) def 466980..467498 (-) 519 WP_005379068.1 peptide deformylase -
  VEA_RS02230 (VEA_002058) - 467637..468731 (+) 1095 WP_012841268.1 LysM peptidoglycan-binding domain-containing protein -
  VEA_RS02235 (VEA_002059) dprA 468715..469824 (+) 1110 WP_006742929.1 DNA-processing protein DprA Machinery gene
  VEA_RS02240 (VEA_002060) - 469827..470306 (+) 480 WP_005379074.1 DUF494 family protein -
  VEA_RS02245 (VEA_002062) - 470385..470954 (+) 570 WP_012841270.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  VEA_RS02250 (VEA_002063) - 471024..472151 (-) 1128 WP_012841271.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VEA_RS02255 (VEA_002064) purE 472156..472641 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VEA_RS02260 (VEA_002065) - 472841..473398 (+) 558 WP_012841272.1 L-threonylcarbamoyladenylate synthase -
  VEA_RS02265 (VEA_002066) hemF 473446..474363 (+) 918 WP_006742931.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40085.73 Da        Isoelectric Point: 6.7200

>NTDB_id=35623 VEA_RS02235 WP_006742929.1 468715..469824(+) (dprA) [Vibrio antiquarius]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVQGNSTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=35623 VEA_RS02235 WP_006742929.1 468715..469824(+) (dprA) [Vibrio antiquarius]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACCA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTGCTTTTTGTTCAAGG
AAATTCTACTTGTCTTTCGCAGCCACAGATAGCAATGGTTGGCAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGCCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.74

100

0.837
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

45.533

94.038

0.428
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment