Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPY16_RS14895 Genome accession   NZ_CP046832
Coordinates   3197467..3199302 (-) Length   611 a.a.
NCBI ID   WP_017420161.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3192467..3204302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS14870 trxA 3192894..3193220 (-) 327 WP_011078987.1 thioredoxin TrxA -
  GPY16_RS14875 rhlB 3193332..3194639 (+) 1308 WP_039452037.1 ATP-dependent RNA helicase RhlB -
  GPY16_RS14880 gppA 3194647..3196143 (+) 1497 WP_017420164.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  GPY16_RS14885 - 3196211..3196882 (-) 672 WP_017420163.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  GPY16_RS14890 - 3197160..3197474 (-) 315 WP_130360882.1 DUF3630 family protein -
  GPY16_RS14895 recQ 3197467..3199302 (-) 1836 WP_017420161.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPY16_RS14900 rarD 3199484..3200398 (+) 915 WP_038969821.1 EamA family transporter RarD -
  GPY16_RS14905 - 3200473..3201270 (+) 798 WP_026130552.1 AraC family transcriptional regulator -
  GPY16_RS14910 - 3201358..3202029 (+) 672 WP_058667350.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68985.89 Da        Isoelectric Point: 6.8891

>NTDB_id=356202 GPY16_RS14895 WP_017420161.1 3197467..3199302(-) (recQ) [Vibrio vulnificus strain 06-2410]
MTSTLLADSSDASMTPQSVLSQVFGYQTFREGQQSAIEAAVEGQDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKHHFPHVPFMALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKPVSQVIRYLESQKGN
CGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAKADKLSNKHYDKKLFAKLRKLRKSIADEEEIPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHYG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=356202 GPY16_RS14895 WP_017420161.1 3197467..3199302(-) (recQ) [Vibrio vulnificus strain 06-2410]
ATGACTTCCACGCTGCTTGCCGACTCTTCCGATGCCTCGATGACGCCCCAAAGCGTTTTATCACAGGTGTTCGGCTATCA
GACTTTCCGTGAGGGGCAACAGTCGGCGATCGAGGCGGCCGTTGAGGGGCAAGATAGTTTAGTGATCATGCCCACCGGTG
GTGGTAAATCGCTGTGCTATCAAATTCCTGCTCTCGTGCGTTCGGGTATTACCTTAGTGATCTCCCCTTTGATTTCACTA
ATGAAAGATCAGGTTGACCAACTTAAAGCCAATGGTGTCGCGGCAGAATGTGTCAACTCGACCTTATCACGTGACGCTCT
GCTCAGTGTCTACAATCGCATGCACGCGGGACAGCTCAAATTGGTGTACGTTTCGCCTGAGCGGGTGTTGATGCGTGATT
TTATTGAACGGCTGGAAAATCTGCCCTTGGCGATGATTGCTGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTCCGCCCCGAATACGCCGCGTTAGGGCAATTGAAGCATCATTTCCCTCACGTGCCGTTTATGGCGCTGACGGCCACCGC
AGACGATGCGACGCGCAAAGACATTTTAAGTCGCTTGCATCTTAATGAACCTCACGTGTACCTCGGCAGTTTTGATCGCC
CCAACATTCGCTATGACCTAGTGGAGAAGCACAAGCCGGTCTCTCAAGTGATTCGCTATTTGGAAAGCCAAAAAGGCAAT
TGCGGCATTATTTACTGTGGCAGTCGTAAAAAAGTTGAAATGCTGACCGAGAAGCTGTGCAACAACCATATTCGAGCGGC
GGGTTATCACGCCGGTATGGACGCGGATGAGCGCGCGTATGTACAGGAAGCGTTTCAACGAGATGACATCCAAATCGTCG
TGGCGACAGTGGCCTTTGGTATGGGGATCAATAAACCCAATGTGCGCTTTGTGGTGCATTTCGATATTCCACGCAATATC
GAATCGTACTACCAAGAAACAGGCAGAGCAGGGCGTGATGGCCTGCCCGCCGAAGCGATGATGCTCTACGACCCTGCAGA
CATTACTTGGTTGCGCCGCATGTTGGATGAGAAAGATGACGGCCCGCAAAAGCAAGTGGAAAGCCATAAGCTCAATGCCA
TGAGTGCGTTTGCCGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTAAATTATTTCGGTGAATACCGCGAGAAGCCTTGC
GGTAATTGCGATATTTGCTTAGATCCGCCAAAGCATTTTGATGCGACGGAAGAAGCTCGCAAAGCGTTGTCGTGCGTTTA
TCGCGTGAATCAAAGCTTTGGTATGGGCTACGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATCCGTGAACACG
GCCACGATAAGATTTCCACTTACGGTTTAGGGCGCGATCACAGCCATGACTATTGGGTGAGTATTTTCCGCCAACTGATC
CATAAAGGGCTGCTGTTTCAAAACATCACCCGTAACTCGACCTTGCAGTTAACCGAAGAAGCAAGGCCATTGCTGCGTGG
TGATATGACGTTGGAGCTGGCGGTGCCGCGTTTAGATACTGCCGCGCGCAGTGCCAAAGCCGACAAACTTTCCAACAAGC
ATTACGACAAAAAGTTGTTCGCCAAATTACGTAAGCTGCGCAAATCGATTGCCGATGAGGAAGAGATCCCACCGTATGTG
GTGTTCAGTGATGCGACGCTGATAGATATGGCCGAAATATTGCCGACCTCATATGGTGAAATGCTCGCGGTGAGTGGTGT
GGGGCAGCGCAAACTAGAAAAATACGCCGATCCGTTTTTAGATTTGATTCAGGAGCACATTACTCACTATGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

DEAD/DEAH box helicase (DEAD)

(32-190)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.865

96.89

0.386