Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY16_RS05060 Genome accession   NZ_CP046832
Coordinates   1071599..1072201 (+) Length   200 a.a.
NCBI ID   WP_011079901.1    Uniprot ID   Q7MIV4
Organism   Vibrio vulnificus strain 06-2410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066599..1077201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS05040 - 1067872..1068264 (+) 393 WP_038964679.1 YbaN family protein -
  GPY16_RS05045 apt 1068430..1068975 (+) 546 WP_011079898.1 adenine phosphoribosyltransferase -
  GPY16_RS05050 dnaX 1068984..1071176 (+) 2193 WP_158105048.1 DNA polymerase III subunit gamma/tau -
  GPY16_RS05055 - 1071254..1071583 (+) 330 WP_011150874.1 YbaB/EbfC family nucleoid-associated protein -
  GPY16_RS05060 recR 1071599..1072201 (+) 603 WP_011079901.1 recombination mediator RecR Machinery gene
  GPY16_RS05065 - 1072264..1073391 (-) 1128 WP_158105049.1 PKD domain-containing protein -
  GPY16_RS05070 - 1073407..1074441 (-) 1035 WP_130314308.1 DUF2860 family protein -
  GPY16_RS05075 - 1074508..1076115 (-) 1608 WP_233262917.1 ATP-binding protein -
  GPY16_RS05080 - 1076112..1076831 (-) 720 WP_038939849.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21870.99 Da        Isoelectric Point: 6.2673

>NTDB_id=356156 GPY16_RS05060 WP_011079901.1 1071599..1072201(+) (recR) [Vibrio vulnificus strain 06-2410]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSHAMTEIGHCNECRTFTEEDVCHICNNPKRQEN
GLLCVVESPADIAAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDIKEVILATNPTVEGEATAHYIAEL
CREHKVDASRIAHGVPVGGELELVDGTTLSHSLLGRHKLN

Nucleotide


Download         Length: 603 bp        

>NTDB_id=356156 GPY16_RS05060 WP_011079901.1 1071599..1072201(+) (recR) [Vibrio vulnificus strain 06-2410]
ATGCGTACCAGCCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTTTGCCTGGGGTTGGCCCCAAGTCAGCACAGCG
TATGGCCTTTCATTTGTTACAGCGAGACAGAAAAGGCGGCCTGCAGCTTGCGGATGCATTAAGTCATGCTATGACGGAAA
TTGGCCACTGTAATGAGTGCCGTACTTTTACCGAAGAAGATGTTTGTCATATCTGCAACAACCCAAAACGCCAAGAAAAC
GGATTATTGTGTGTGGTCGAAAGCCCTGCCGATATCGCCGCCGTGGAAGCCACAGGACAATTTTCTGGGCGTTACTTTGT
GTTGATGGGGCACCTATCACCGCTTGATGGTATTGGACCTAGTGATATTGGCCTCGATGTCCTCGATTATCGTCTGCGTC
GCGGTGATATCAAAGAAGTGATCTTAGCGACCAACCCTACCGTGGAAGGTGAAGCGACCGCGCACTACATCGCAGAGCTC
TGTCGAGAGCATAAAGTGGATGCCAGTCGAATTGCTCATGGTGTTCCCGTCGGTGGGGAGCTTGAGCTGGTGGATGGAAC
TACGCTCTCCCATTCATTATTGGGTAGACACAAACTCAACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MIV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.5

100

0.435