Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY16_RS00835 | Genome accession | NZ_CP046832 |
| Coordinates | 173696..174883 (+) | Length | 395 a.a. |
| NCBI ID | WP_158104885.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 06-2410 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 168696..179883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY16_RS00800 | - | 168908..169237 (-) | 330 | WP_017420388.1 | DUF2500 domain-containing protein | - |
| GPY16_RS00805 | - | 169473..169841 (+) | 369 | WP_026050296.1 | hypothetical protein | - |
| GPY16_RS00810 | - | 170874..171494 (+) | 621 | WP_013570939.1 | lysoplasmalogenase | - |
| GPY16_RS00815 | - | 171571..171792 (+) | 222 | WP_039541848.1 | YecH family metal-binding protein | - |
| GPY16_RS00820 | - | 171937..172530 (+) | 594 | WP_026050297.1 | YhgN family NAAT transporter | - |
| GPY16_RS00825 | - | 172614..172880 (-) | 267 | WP_017420383.1 | DUF1145 domain-containing protein | - |
| GPY16_RS00830 | rsmD | 172899..173492 (-) | 594 | WP_158104884.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GPY16_RS00835 | pilA | 173696..174883 (+) | 1188 | WP_158104885.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GPY16_RS00840 | ftsE | 174904..175581 (+) | 678 | WP_011079167.1 | cell division ATP-binding protein FtsE | - |
| GPY16_RS00845 | ftsX | 175568..176536 (+) | 969 | WP_011079168.1 | permease-like cell division protein FtsX | - |
| GPY16_RS00850 | rpoH | 176713..177570 (+) | 858 | WP_017420381.1 | RNA polymerase sigma factor RpoH | - |
| GPY16_RS00855 | glpE | 178005..178325 (+) | 321 | WP_011079170.1 | thiosulfate sulfurtransferase GlpE | - |
| GPY16_RS00860 | glpG | 178411..179253 (+) | 843 | WP_038964428.1 | rhomboid family intramembrane serine protease GlpG | - |
| GPY16_RS00865 | - | 179302..179712 (-) | 411 | WP_011079172.1 | flagellar basal body-associated protein FliL | - |
Sequence
Protein
Download Length: 395 a.a. Molecular weight: 43264.15 Da Isoelectric Point: 4.3973
>NTDB_id=356124 GPY16_RS00835 WP_158104885.1 173696..174883(+) (pilA) [Vibrio vulnificus strain 06-2410]
MTEKKKRGLLSWLGFGDDDQVKQPEPAQSEEVISESDEKTVESVEPIANQEVVEEVAVEPISESEAEEPVEVTPVVVEAP
RVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLVADVGMDTTLKIIENLTEKASRRDLKD
GEALYGLLKEEMAEILTKVEQPLQVDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQV
WGERNSVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFETQEFIDALFSREE
MTEKKKRGLLSWLGFGDDDQVKQPEPAQSEEVISESDEKTVESVEPIANQEVVEEVAVEPISESEAEEPVEVTPVVVEAP
RVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLVADVGMDTTLKIIENLTEKASRRDLKD
GEALYGLLKEEMAEILTKVEQPLQVDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQV
WGERNSVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFETQEFIDALFSREE
Nucleotide
Download Length: 1188 bp
>NTDB_id=356124 GPY16_RS00835 WP_158104885.1 173696..174883(+) (pilA) [Vibrio vulnificus strain 06-2410]
ATGACGGAAAAGAAAAAGCGCGGATTACTATCGTGGCTTGGCTTTGGTGACGATGACCAAGTAAAACAACCAGAGCCTGC
ACAATCAGAAGAGGTGATCAGCGAGTCTGACGAAAAAACCGTAGAGAGCGTTGAACCGATTGCCAACCAAGAAGTGGTGG
AAGAGGTTGCGGTAGAGCCAATCAGCGAATCAGAAGCTGAAGAGCCCGTTGAAGTGACACCTGTGGTGGTTGAAGCGCCG
CGTGTGCAAGAACAAGAAAAACCAACAGAAAGCTTTTTTGCGCGCCTAAAACGCAGCTTGAGTCGCACGAAAGCCAATAT
CGGCGCTGGTTTCTTTGGCCTATTTAAAGGCAAGAAAATCGATGATGAGCTGTTTGAAGAGCTGGAAGAACAGCTACTCG
TTGCGGATGTGGGTATGGATACCACGTTGAAAATCATCGAAAACTTAACAGAAAAAGCGTCTCGCCGTGACTTAAAAGAT
GGTGAGGCTCTGTATGGTTTGCTCAAAGAAGAGATGGCGGAGATCCTCACTAAGGTTGAGCAACCATTGCAAGTGGACAG
CAGCAAAACCCCTTACGTTATCCTGATGGTTGGGGTAAATGGCGTGGGTAAGACCACCACCATTGGTAAGTTGGCGAAAC
AGTTCCAAAATCAAGGTAAGAAAGTGATGTTGGCGGCGGGCGATACCTTCCGTGCGGCGGCTGTTGAGCAGTTGCAAGTG
TGGGGCGAGCGTAACAGTGTCCCAGTGATCGCTCAGCATACTGGCGCAGACAGTGCATCGGTGATTTATGATGCGATTGA
AGCCGCCAAAGCGCGTGGCGTTGATGTGGTGATCGCCGATACTGCGGGTCGCTTGCAAAACAAGAGCAACTTGATGGAAG
AGCTGCGCAAAATTGTTCGAGTGATGAAGAAAATCGACGACTCCGCGCCGCATGAAATCATGTTGACCTTGGATGCAGGC
ACTGGTCAAAACGCCATTAGCCAAGCGAAATTGTTTAGCGATGTCGCGCCGATCACCGGGATCACCTTGACCAAACTGGA
TGGCACAGCGAAAGGCGGCGTGATCTTTGCTATTGCCGATCAGTTTAACATTCCTATTCGTTACATCGGTGTGGGGGAAG
GGATTGAGGATCTCCGCCCGTTTGAAACCCAAGAATTTATCGACGCGCTATTTAGTCGAGAAGAGTAA
ATGACGGAAAAGAAAAAGCGCGGATTACTATCGTGGCTTGGCTTTGGTGACGATGACCAAGTAAAACAACCAGAGCCTGC
ACAATCAGAAGAGGTGATCAGCGAGTCTGACGAAAAAACCGTAGAGAGCGTTGAACCGATTGCCAACCAAGAAGTGGTGG
AAGAGGTTGCGGTAGAGCCAATCAGCGAATCAGAAGCTGAAGAGCCCGTTGAAGTGACACCTGTGGTGGTTGAAGCGCCG
CGTGTGCAAGAACAAGAAAAACCAACAGAAAGCTTTTTTGCGCGCCTAAAACGCAGCTTGAGTCGCACGAAAGCCAATAT
CGGCGCTGGTTTCTTTGGCCTATTTAAAGGCAAGAAAATCGATGATGAGCTGTTTGAAGAGCTGGAAGAACAGCTACTCG
TTGCGGATGTGGGTATGGATACCACGTTGAAAATCATCGAAAACTTAACAGAAAAAGCGTCTCGCCGTGACTTAAAAGAT
GGTGAGGCTCTGTATGGTTTGCTCAAAGAAGAGATGGCGGAGATCCTCACTAAGGTTGAGCAACCATTGCAAGTGGACAG
CAGCAAAACCCCTTACGTTATCCTGATGGTTGGGGTAAATGGCGTGGGTAAGACCACCACCATTGGTAAGTTGGCGAAAC
AGTTCCAAAATCAAGGTAAGAAAGTGATGTTGGCGGCGGGCGATACCTTCCGTGCGGCGGCTGTTGAGCAGTTGCAAGTG
TGGGGCGAGCGTAACAGTGTCCCAGTGATCGCTCAGCATACTGGCGCAGACAGTGCATCGGTGATTTATGATGCGATTGA
AGCCGCCAAAGCGCGTGGCGTTGATGTGGTGATCGCCGATACTGCGGGTCGCTTGCAAAACAAGAGCAACTTGATGGAAG
AGCTGCGCAAAATTGTTCGAGTGATGAAGAAAATCGACGACTCCGCGCCGCATGAAATCATGTTGACCTTGGATGCAGGC
ACTGGTCAAAACGCCATTAGCCAAGCGAAATTGTTTAGCGATGTCGCGCCGATCACCGGGATCACCTTGACCAAACTGGA
TGGCACAGCGAAAGGCGGCGTGATCTTTGCTATTGCCGATCAGTTTAACATTCCTATTCGTTACATCGGTGTGGGGGAAG
GGATTGAGGATCTCCGCCCGTTTGAAACCCAAGAATTTATCGACGCGCTATTTAGTCGAGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50 |
92.152 |
0.461 |