Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY55_RS26265 Genome accession   NZ_CP046831
Coordinates   3370427..3371638 (+) Length   403 a.a.
NCBI ID   WP_005455150.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365427..3376638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS26220 - 3365727..3366056 (-) 330 WP_083135723.1 DUF2500 domain-containing protein -
  GPY55_RS26225 - 3366298..3366666 (+) 369 WP_005489749.1 hypothetical protein -
  GPY55_RS26230 - 3366729..3366908 (-) 180 WP_005458791.1 hypothetical protein -
  GPY55_RS26240 - 3367643..3368263 (+) 621 WP_005481960.1 lysoplasmalogenase -
  GPY55_RS26245 - 3368333..3368554 (+) 222 WP_025624550.1 YecH family metal-binding protein -
  GPY55_RS26250 - 3368674..3369258 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  GPY55_RS26255 - 3369312..3369578 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY55_RS26260 rsmD 3369604..3370203 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY55_RS26265 pilA 3370427..3371638 (+) 1212 WP_005455150.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY55_RS26270 ftsE 3371661..3372335 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY55_RS26275 ftsX 3372325..3373293 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  GPY55_RS26280 rpoH 3373469..3374329 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY55_RS26285 glpE 3374821..3375141 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY55_RS26290 glpG 3375141..3375983 (+) 843 WP_025579977.1 rhomboid family intramembrane serine protease GlpG -
  GPY55_RS26295 - 3376043..3376453 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43954.55 Da        Isoelectric Point: 4.3038

>NTDB_id=356116 GPY55_RS26265 WP_005455150.1 3370427..3371638(+) (pilA) [Vibrio parahaemolyticus strain 2012AW-0224]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
EPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEK
ASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRA
AAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHE
IMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDALFS
REE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=356116 GPY55_RS26265 WP_005455150.1 3370427..3371638(+) (pilA) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAG
CCTAAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTG
AAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAA
GCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAGGAAATGGCGGAGATTCTATCTAAAGT
AGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCA
CCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCG
GCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGC
ATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTAC
AAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAA
ATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAAC
CGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAA
TTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGC
CGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(200-399)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.189

91.811

0.452

Multiple sequence alignment