Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY55_RS24515 Genome accession   NZ_CP046831
Coordinates   3029649..3030506 (-) Length   285 a.a.
NCBI ID   WP_050548931.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024649..3035506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS24490 - 3024690..3025361 (-) 672 WP_083135624.1 inovirus Gp2 family protein -
  GPY55_RS24495 - 3025560..3026810 (-) 1251 WP_083135623.1 hypothetical protein -
  GPY55_RS24500 - 3026967..3027926 (+) 960 WP_139794947.1 hypothetical protein -
  GPY55_RS24505 - 3028218..3028643 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY55_RS24510 - 3028773..3029612 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY55_RS24515 amiE 3029649..3030506 (-) 858 WP_050548931.1 ABC transporter ATP-binding protein Regulator
  GPY55_RS24520 - 3030516..3032342 (-) 1827 WP_005458972.1 extracellular solute-binding protein -
  GPY55_RS24525 - 3032381..3033424 (-) 1044 WP_015296095.1 ABC transporter permease subunit -
  GPY55_RS24530 - 3033426..3034451 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31608.68 Da        Isoelectric Point: 4.4974

>NTDB_id=356103 GPY55_RS24515 WP_050548931.1 3029649..3030506(-) (amiE) [Vibrio parahaemolyticus strain 2012AW-0224]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLENEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=356103 GPY55_RS24515 WP_050548931.1 3029649..3030506(-) (amiE) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGTAGTGGTAAGAGCGTGACCTCCA
TGTCTATCATGGGACTGTTGCCAAAGCCTTACGGAAATATTGTCAATGGTGAGGTTAACTATCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATTTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTAGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGAAAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-272)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

51.136

92.632

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361