Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BAMTA208_RS19905 Genome accession   NC_017188
Coordinates   3927934..3928785 (-) Length   283 a.a.
NCBI ID   WP_014471333.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3922934..3933785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS19880 (BAMTA208_20605) - 3923140..3925143 (-) 2004 WP_014471330.1 molybdopterin-dependent oxidoreductase -
  BAMTA208_RS19885 (BAMTA208_20610) - 3925190..3925396 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  BAMTA208_RS19890 (BAMTA208_20615) - 3925482..3926486 (-) 1005 WP_038463172.1 membrane protein -
  BAMTA208_RS19895 (BAMTA208_20620) - 3926660..3927070 (+) 411 WP_014471332.1 GNAT family N-acetyltransferase -
  BAMTA208_RS19900 (BAMTA208_20625) yyaC 3927290..3927904 (+) 615 WP_013354269.1 spore protease YyaC -
  BAMTA208_RS19905 (BAMTA208_20630) spo0J 3927934..3928785 (-) 852 WP_014471333.1 ParB/RepB/Spo0J family partition protein Regulator
  BAMTA208_RS19910 (BAMTA208_20635) soj 3928778..3929539 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  BAMTA208_RS19915 (BAMTA208_20640) noc 3929838..3930689 (-) 852 WP_007615083.1 nucleoid occlusion protein -
  BAMTA208_RS19920 (BAMTA208_20645) rsmG 3930811..3931530 (-) 720 WP_013354272.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BAMTA208_RS19925 (BAMTA208_20650) mnmG 3931544..3933430 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32338.29 Da        Isoelectric Point: 8.3472

>NTDB_id=35610 BAMTA208_RS19905 WP_014471333.1 3927934..3928785(-) (spo0J) [Bacillus amyloliquefaciens TA208]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRELSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDITQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNSNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=35610 BAMTA208_RS19905 WP_014471333.1 3927934..3928785(-) (spo0J) [Bacillus amyloliquefaciens TA208]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAATGCGTTGTTTAATCAAGTTGATTTGTCTGAAGAGACAGTGGAAGAGAT
TAAGATCAGTGATTTACGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTACGATATTGTAGCCGGCGAACGC
CGTTATCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCTATCGTGCGGGAGTTATCTGAATCGCTGATGCGGGA
AATCGCCCTATTGGAGAACCTTCAGCGGGAAGATTTATCACCGCTTGAAGAAGCTCTTGCATATGATTCACTGCTGAAGC
ATTTGGATATTACGCAGGAACAGCTCGCTAAACGGCTCGGGAAAAGCAGACCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTTCCTGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGGCACGGCAGAACCCTGCTCGGTTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTTAACGTCCGTCAGCTTGAGCAGCTCATTC
AGCAATTAAACAGTAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAGGGGAAAATTGAGATTGAGTTTTTCTC
AAATGAAGACCTTGAACGTATCCTTGAGCTTTTGTCTGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(164-215)

ParB/Sulfiredoxin domain (ParB_N)

(25-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382