Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   E5L67_RS06230 Genome accession   NZ_CP038868
Coordinates   1186494..1187675 (+) Length   393 a.a.
NCBI ID   WP_002787827.1    Uniprot ID   -
Organism   Campylobacter coli strain 16SHKX65C     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181494..1192675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS06210 - 1181944..1182135 (+) 192 WP_072223085.1 hypothetical protein -
  E5L67_RS06215 - 1182225..1182659 (+) 435 WP_072223084.1 hypothetical protein -
  E5L67_RS09535 - 1182689..1184434 (+) 1746 WP_162284637.1 glycosyltransferase family 2 protein -
  E5L67_RS06225 - 1184470..1186497 (+) 2028 WP_162284638.1 capsular polysaccharide biosynthesis protein -
  E5L67_RS06230 kpsS 1186494..1187675 (+) 1182 WP_002787827.1 capsule biosynthesis protein Regulator
  E5L67_RS06235 - 1187744..1188865 (+) 1122 WP_057990873.1 DUF829 domain-containing protein -
  E5L67_RS06240 - 1188862..1190232 (+) 1371 WP_002792165.1 cytochrome P450 -
  E5L67_RS06245 - 1190229..1190651 (+) 423 WP_002779166.1 hypothetical protein -
  E5L67_RS06250 acpS 1190654..1191001 (-) 348 WP_002779165.1 holo-ACP synthase -
  E5L67_RS06255 fliL 1191001..1191537 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46439.14 Da        Isoelectric Point: 9.9585

>NTDB_id=356070 E5L67_RS06230 WP_002787827.1 1186494..1187675(+) (kpsS) [Campylobacter coli strain 16SHKX65C]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSTFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKYH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=356070 E5L67_RS06230 WP_002787827.1 1186494..1187675(+) (kpsS) [Campylobacter coli strain 16SHKX65C]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTACTTTTCTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGTACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAGTTCAATGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.5

99.746

0.873

Multiple sequence alignment