Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   E4Z98_RS04910 Genome accession   NZ_CP038865
Coordinates   1017674..1018627 (-) Length   317 a.a.
NCBI ID   WP_241856662.1    Uniprot ID   -
Organism   Vagococcus xieshaowenii strain CF-49     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1012674..1023627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS04885 (E4Z98_04885) - 1013078..1013344 (-) 267 WP_135254714.1 TetR/AcrR family transcriptional regulator -
  E4Z98_RS04890 (E4Z98_04890) - 1013472..1014857 (-) 1386 WP_167790932.1 aldehyde dehydrogenase family protein -
  E4Z98_RS04895 (E4Z98_04895) - 1014976..1015923 (-) 948 WP_135254712.1 siderophore ABC transporter substrate-binding protein -
  E4Z98_RS04900 (E4Z98_04900) - 1015953..1016711 (-) 759 WP_135254711.1 ATP-binding cassette domain-containing protein -
  E4Z98_RS04905 (E4Z98_04905) - 1016722..1017681 (-) 960 WP_135254710.1 iron chelate uptake ABC transporter family permease subunit -
  E4Z98_RS04910 (E4Z98_04910) ceuB 1017674..1018627 (-) 954 WP_241856662.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  E4Z98_RS04915 (E4Z98_04915) - 1018855..1020630 (-) 1776 WP_135254708.1 acyltransferase family protein -
  E4Z98_RS04920 (E4Z98_04920) - 1020796..1021017 (-) 222 WP_241856663.1 YozE family protein -
  E4Z98_RS04925 (E4Z98_04925) msrA 1021007..1021528 (-) 522 WP_135254706.1 peptide-methionine (S)-S-oxide reductase MsrA -
  E4Z98_RS04930 (E4Z98_04930) - 1021531..1022169 (-) 639 WP_135254705.1 YpmS family protein -
  E4Z98_RS04935 (E4Z98_04935) - 1022186..1023013 (-) 828 WP_135254704.1 SGNH/GDSL hydrolase family protein -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34482.36 Da        Isoelectric Point: 9.8597

>NTDB_id=356046 E4Z98_RS04910 WP_241856662.1 1017674..1018627(-) (ceuB) [Vagococcus xieshaowenii strain CF-49]
MKRYLLPLFFLLLVITSLFIGVQSIPLTDIFNLSETQKLVLWSTRIPRTVSLVIAGATASVCGLIMQHLTQNKFVSPTTA
GTADSARLGILIAMIFFPNSSSIMRSFVAFIFAFIGTMVFVQLINRLPQKSNVMVPLIGMMFGNIIGSIVTFFAYQLEII
QNMSSWLQGNFSTITRNGYELIYLSVPLLIIASLYAYQFTLAGMGKDIATSVGMNYTMIQMGGLIIVSLASSVLLVTVGN
LPFLGIVIPNLVSLYAGDQMKKTLWPTALCGSLFLIGCDILSRTIIPPYEVPVSLIVGIIGSLAFIGLLVRGTKSHA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=356046 E4Z98_RS04910 WP_241856662.1 1017674..1018627(-) (ceuB) [Vagococcus xieshaowenii strain CF-49]
TTGAAAAGATATTTATTACCTTTGTTCTTTCTATTATTAGTCATCACTTCATTGTTCATAGGTGTACAAAGTATTCCTCT
TACAGATATATTTAATCTGTCTGAAACACAGAAATTAGTATTATGGAGTACTCGAATCCCTAGAACAGTGAGTTTAGTTA
TAGCTGGGGCAACGGCTAGTGTGTGTGGGTTGATCATGCAACATCTAACACAAAATAAATTTGTTTCACCGACAACTGCA
GGCACAGCAGATAGTGCTCGCTTAGGTATCCTAATCGCGATGATTTTTTTTCCTAATAGTTCTAGTATTATGCGATCTTT
TGTTGCTTTTATCTTCGCCTTCATCGGTACGATGGTATTTGTTCAATTGATCAATCGTTTACCACAAAAAAGTAATGTCA
TGGTTCCTTTGATAGGGATGATGTTTGGTAATATCATTGGTTCTATTGTGACCTTTTTTGCCTATCAACTAGAAATTATC
CAAAATATGTCTTCGTGGTTGCAAGGTAATTTCTCAACAATTACTCGAAATGGTTACGAATTGATTTATTTATCTGTGCC
ATTACTAATTATAGCAAGTCTTTATGCGTATCAATTTACGCTTGCTGGAATGGGGAAAGATATTGCGACGAGTGTTGGGA
TGAATTATACAATGATTCAAATGGGTGGTTTAATCATTGTGTCCTTGGCTAGCTCGGTGTTACTAGTAACAGTAGGAAAT
TTACCTTTTTTAGGAATTGTTATTCCTAATCTGGTGTCGTTATATGCGGGGGATCAAATGAAAAAAACACTTTGGCCCAC
TGCGTTATGTGGTAGTTTATTCTTGATTGGTTGTGATATTCTTTCGAGAACAATTATCCCACCCTACGAAGTACCGGTGA
GTTTAATTGTCGGTATCATTGGTAGTTTAGCCTTTATTGGACTACTTGTTAGGGGGACGAAATCACATGCCTAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.831

94.953

0.483


Multiple sequence alignment