Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   E4Z98_RS02790 Genome accession   NZ_CP038865
Coordinates   567907..569583 (+) Length   558 a.a.
NCBI ID   WP_135254153.1    Uniprot ID   -
Organism   Vagococcus xieshaowenii strain CF-49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562907..574583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS02760 (E4Z98_02760) - 563385..563816 (+) 432 WP_135254164.1 Asp23/Gls24 family envelope stress response protein -
  E4Z98_RS02765 (E4Z98_02765) nusB 563818..564258 (+) 441 WP_135254162.1 transcription antitermination factor NusB -
  E4Z98_RS02770 (E4Z98_02770) xseA 564589..565929 (+) 1341 WP_135254160.1 exodeoxyribonuclease VII large subunit -
  E4Z98_RS02775 (E4Z98_02775) - 565933..566175 (+) 243 WP_135254158.1 exodeoxyribonuclease VII small subunit -
  E4Z98_RS02780 (E4Z98_02780) - 566168..567055 (+) 888 WP_135254157.1 polyprenyl synthetase family protein -
  E4Z98_RS02785 (E4Z98_02785) - 567060..567878 (+) 819 WP_135254155.1 TlyA family RNA methyltransferase -
  E4Z98_RS02790 (E4Z98_02790) recN 567907..569583 (+) 1677 WP_135254153.1 DNA repair protein RecN Machinery gene
  E4Z98_RS02795 (E4Z98_02795) - 569636..570466 (-) 831 WP_135254151.1 pyruvate, water dikinase regulatory protein -
  E4Z98_RS02800 (E4Z98_02800) - 570542..570991 (+) 450 WP_135254149.1 Fur family transcriptional regulator -
  E4Z98_RS02805 (E4Z98_02805) rpsU 571098..571274 (+) 177 WP_126831326.1 30S ribosomal protein S21 -
  E4Z98_RS02810 (E4Z98_02810) - 571299..571742 (+) 444 WP_135254147.1 GatB/YqeY domain-containing protein -
  E4Z98_RS02815 (E4Z98_02815) - 571849..572346 (+) 498 WP_135254145.1 GNAT family N-acetyltransferase -
  E4Z98_RS02820 (E4Z98_02820) - 572466..573149 (+) 684 WP_209316296.1 O-methyltransferase -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63297.65 Da        Isoelectric Point: 4.5930

>NTDB_id=356037 E4Z98_RS02790 WP_135254153.1 567907..569583(+) (recN) [Vagococcus xieshaowenii strain CF-49]
MLEELVIKNFAIISDLRLSFEKGMTVLTGETGAGKSIIIDAVGLLVGGRGSADFIRHAEEKSVLEGQFFVNERVLPDVKE
ALEQLGIEMDDQTVIISRTIFRSGKNICRVNNQLVNTTALKQIGQFLVDIHGQHEHQSLMNSERHIGYLDQFAIQEIHPI
LMEYQEVFHQQQTLSRQIRQLETNEKEFVQRMDMLNFQREEIETAEISVGEEQKLLEERQMLVNHQKITDALNMSYQFIQ
NDEMNSLSNIGQAMSELETISDLTEDFKTLYDEVASSYYQLEEAARTIQSELSGMEMDEKRLNHVEERLNTIRQMKRKYG
DSEESILEHYDNVVKELEESMFSGAKQERLEQELAEATANVQVLSHQLTTIRTAKATILEEAIVSQLKDLYLDKTIFNVV
VEPVKPYELGSDLVTFYISTNPGEEPKPLTKVASGGELSRVMLGMKSIFSESQGITSIIFDEVDTGVSGRVAQAIANKIH
QIATDSQVLCITHLPQVAASADHHYFIEKHIVDERTQTTVYPLSKEQRVDEVARMLAGEVITDLSKQHAKELLNLSTK

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=356037 E4Z98_RS02790 WP_135254153.1 567907..569583(+) (recN) [Vagococcus xieshaowenii strain CF-49]
ATGTTAGAAGAACTAGTCATTAAAAATTTTGCGATTATTTCAGATTTACGATTGTCTTTTGAAAAAGGTATGACGGTCTT
AACGGGCGAAACAGGGGCTGGAAAATCGATTATTATTGACGCTGTTGGGTTATTAGTTGGTGGACGTGGTTCTGCCGATT
TTATTCGACACGCAGAAGAAAAATCGGTTTTAGAAGGTCAGTTTTTTGTGAATGAACGTGTTTTACCAGATGTTAAGGAA
GCACTTGAACAATTAGGGATTGAGATGGACGATCAAACCGTTATTATTTCGAGAACTATTTTTAGAAGTGGTAAAAACAT
TTGCCGAGTGAATAATCAGCTAGTGAATACAACGGCGCTAAAACAGATTGGTCAATTTTTAGTAGATATTCATGGTCAAC
ATGAGCATCAGTCGCTTATGAATTCGGAGCGTCATATCGGTTATTTGGATCAATTTGCCATACAAGAGATTCATCCTATA
TTGATGGAGTATCAAGAAGTGTTTCACCAACAACAGACGTTATCTCGTCAAATTCGTCAATTAGAAACAAATGAAAAAGA
ATTTGTTCAACGAATGGACATGTTGAATTTTCAACGTGAGGAAATTGAAACGGCTGAAATTAGTGTAGGGGAAGAACAGA
AACTTCTAGAAGAACGTCAAATGTTAGTCAATCATCAAAAAATTACCGATGCCTTAAATATGAGCTACCAGTTTATTCAA
AATGATGAGATGAATAGCTTATCTAATATTGGTCAAGCCATGTCTGAACTTGAAACGATTAGTGATTTGACCGAAGATTT
CAAAACGTTGTATGACGAAGTCGCTTCTAGTTATTATCAATTAGAAGAAGCTGCGCGTACGATTCAAAGTGAATTAAGTG
GCATGGAGATGGATGAGAAACGATTAAATCATGTAGAAGAACGCTTGAATACTATTCGCCAAATGAAGCGTAAATATGGT
GATTCTGAAGAAAGTATTTTAGAACACTATGATAACGTGGTAAAAGAATTAGAAGAGTCAATGTTTAGCGGAGCAAAACA
AGAACGTCTCGAGCAAGAACTAGCTGAAGCAACGGCTAATGTACAAGTGTTATCGCATCAATTGACAACGATTAGAACAG
CCAAGGCAACGATTCTTGAAGAGGCAATTGTGTCACAGTTAAAAGATTTATACTTAGACAAAACTATTTTTAACGTCGTG
GTAGAACCTGTAAAACCGTATGAATTGGGAAGTGACTTGGTGACCTTCTATATTAGTACAAACCCTGGAGAAGAACCTAA
GCCATTAACAAAAGTTGCTTCAGGTGGTGAGTTATCACGTGTCATGTTAGGAATGAAGAGTATTTTCTCTGAATCTCAGG
GAATTACGAGTATTATTTTTGATGAGGTAGACACAGGGGTGAGTGGTCGAGTTGCGCAAGCAATTGCTAATAAGATTCAT
CAAATTGCAACGGACTCACAAGTATTATGTATTACCCATTTACCTCAAGTAGCTGCTTCAGCGGATCATCATTATTTCAT
TGAGAAACATATCGTCGATGAACGTACGCAAACAACGGTCTATCCATTATCGAAAGAGCAACGTGTTGATGAAGTGGCAA
GAATGTTGGCCGGTGAAGTGATCACAGACTTGTCTAAACAACATGCGAAAGAGTTATTAAATTTATCGACAAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.506

100

0.495

Multiple sequence alignment