Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E4Z98_RS01010 Genome accession   NZ_CP038865
Coordinates   222035..223846 (+) Length   603 a.a.
NCBI ID   WP_135254368.1    Uniprot ID   A0AAJ5EE92
Organism   Vagococcus xieshaowenii strain CF-49     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 217035..228846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS00990 (E4Z98_00990) - 217673..218326 (+) 654 WP_135254372.1 hypothetical protein -
  E4Z98_RS00995 (E4Z98_00995) - 218364..219359 (+) 996 WP_167790909.1 putative sulfate exporter family transporter -
  E4Z98_RS01000 (E4Z98_01000) - 219519..220790 (+) 1272 WP_135254370.1 NCS2 family permease -
  E4Z98_RS01005 (E4Z98_01005) - 220863..221999 (+) 1137 WP_167790908.1 competence protein CoiA family protein -
  E4Z98_RS01010 (E4Z98_01010) pepF 222035..223846 (+) 1812 WP_135254368.1 oligoendopeptidase F Regulator
  E4Z98_RS01015 (E4Z98_01015) - 223927..224319 (-) 393 WP_135254367.1 OsmC family protein -
  E4Z98_RS01020 (E4Z98_01020) - 224320..225222 (-) 903 WP_135254366.1 ATP-binding cassette domain-containing protein -
  E4Z98_RS01025 (E4Z98_01025) - 225215..226111 (-) 897 WP_209316304.1 ABC transporter ATP-binding protein -
  E4Z98_RS01030 (E4Z98_01030) - 226112..226945 (-) 834 WP_135254364.1 ABC transporter permease -
  E4Z98_RS01035 (E4Z98_01035) - 226945..227907 (-) 963 WP_135254363.1 ABC transporter permease -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68540.08 Da        Isoelectric Point: 4.6085

>NTDB_id=356031 E4Z98_RS01010 WP_135254368.1 222035..223846(+) (pepF) [Vagococcus xieshaowenii strain CF-49]
MSEPKRLPKREELDEALTWDLTKIFATDEDFEASYTAFEKKIPEVKQYQGTLKEGAGQFLAAIEATLELTRELETMYVYT
SMKNDQDTANTKYQGMSGKMSGLVAKASEAISWFEPEMLQLTDEEIWAYVEEEPKLEVYRQMIKSTLAERAHVLSEKEEA
LLAGAGEIFGTAGDTFAILNNADLKFPIIEGEEGEAIQLSHGVYGQLMESVKPEVREAAFKGLYSVYEQFQHTFATTLSS
NVKVHNYKAKARNYPSARAAALAGNHIPESVYDTLIEVVHKHLPLLHRYVALRKKMMGVDELHMYDMYTPILGDAPIRYT
YEESVEKSKEALKPLGEEYGKVVEEAYTNRWVDVVENQGKRSGAYSSGAYDTAPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHVEDAKGT
PLTSEFLSDYYANLNANYYGPAVEKDAEIALEWSRIPHFYYNYYVYQYSTGFAAASALAAKIVVGEEGALDNYLTYLKAG
RSDYPIDIMKKAGVDMTQANYLEDAMKVFETRLNEFEALIDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=356031 E4Z98_RS01010 WP_135254368.1 222035..223846(+) (pepF) [Vagococcus xieshaowenii strain CF-49]
ATGAGTGAACCGAAACGATTACCAAAACGCGAGGAATTAGATGAAGCGTTGACATGGGACTTAACGAAAATTTTTGCAAC
AGATGAGGATTTTGAAGCAAGCTATACGGCTTTTGAGAAAAAAATCCCTGAAGTGAAACAATATCAAGGCACATTAAAAG
AAGGAGCAGGCCAATTTTTAGCGGCTATTGAAGCAACCTTAGAACTGACACGTGAATTGGAAACAATGTATGTATACACA
AGTATGAAGAACGACCAAGACACAGCGAACACCAAATATCAAGGGATGTCTGGTAAAATGAGTGGCTTGGTAGCTAAAGC
TTCAGAAGCTATTTCATGGTTTGAACCTGAAATGTTACAATTAACAGATGAAGAAATCTGGGCTTACGTTGAAGAAGAAC
CAAAACTTGAAGTGTACCGTCAAATGATTAAATCAACTTTAGCAGAACGTGCGCATGTTTTATCAGAAAAAGAAGAAGCA
TTGTTAGCGGGTGCAGGTGAGATTTTTGGTACAGCAGGGGATACGTTTGCTATTTTAAATAATGCGGATTTGAAATTTCC
GATTATTGAAGGTGAAGAAGGCGAAGCTATTCAGTTATCGCATGGTGTTTATGGTCAATTAATGGAAAGTGTGAAGCCTG
AAGTCCGTGAAGCGGCATTTAAAGGTTTATACAGTGTATACGAGCAATTCCAACACACGTTTGCGACGACTTTATCAAGT
AATGTTAAAGTACATAACTATAAAGCAAAAGCACGTAACTATCCATCTGCTCGTGCAGCAGCTTTAGCAGGCAATCATAT
TCCAGAAAGCGTATATGATACGTTAATCGAGGTTGTACATAAACACTTACCATTATTACATCGCTATGTTGCGTTACGTA
AAAAAATGATGGGTGTCGATGAGTTACATATGTATGATATGTATACGCCTATTTTAGGAGATGCCCCTATTCGTTATACT
TATGAAGAATCGGTTGAAAAATCAAAAGAAGCGTTAAAACCATTAGGTGAAGAATATGGTAAAGTAGTAGAAGAAGCTTA
TACGAATCGCTGGGTTGATGTAGTTGAAAATCAAGGGAAACGTAGTGGTGCGTATTCTTCAGGCGCCTACGATACTGCAC
CTTACATTTTAATGAACTGGCACGATAGTTTGGATCAACTATATACATTGGTTCATGAAATGGGGCATAGTGTGCATAGT
TATTTCACACGCAGTAATCAACCGTATGTTTATGGAGACTATTCAATTTTCTTAGCGGAAATTGCGTCAACAACCAATGA
AAATATCTTAACAGAGCACTTATTAGCCACTGAAACAGATCCTAAAGTCCGTGCCTTCATCTTGAATCGTTACCTAGATG
GTTTCAAAGGAACCGTTTTCCGTCAAACACAGTTTGCAGAATTTGAACACTTTATTCATGTAGAAGATGCTAAAGGAACA
CCATTAACAAGTGAATTCTTAAGTGATTATTATGCGAATTTAAATGCTAATTATTATGGACCAGCTGTAGAAAAAGATGC
AGAAATTGCGCTAGAGTGGTCTCGTATTCCTCATTTTTACTATAATTACTATGTTTACCAATACTCAACAGGTTTTGCGG
CAGCATCAGCGTTAGCTGCTAAAATTGTGGTTGGTGAAGAAGGTGCCTTAGATAACTATCTAACTTATCTAAAAGCTGGA
CGTAGTGATTATCCAATTGATATCATGAAAAAAGCCGGTGTTGATATGACACAAGCCAATTATTTAGAAGATGCTATGAA
AGTATTTGAAACAAGATTAAACGAATTTGAAGCGTTAATCGATCAATTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

57.167

98.342

0.562

Multiple sequence alignment