Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   E5Z46_RS10990 Genome accession   NZ_CP038860
Coordinates   2112414..2113361 (+) Length   315 a.a.
NCBI ID   WP_013145615.1    Uniprot ID   -
Organism   Geobacillus kaustophilus NBRC 102445     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107414..2118361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Z46_RS10975 (E5Z46_10970) - 2108767..2110056 (+) 1290 WP_015374601.1 CitMHS family transporter -
  E5Z46_RS10980 (E5Z46_10975) - 2110100..2111410 (+) 1311 WP_015374602.1 acyclic terpene utilization AtuA family protein -
  E5Z46_RS10985 (E5Z46_10980) - 2111416..2111739 (+) 324 WP_015374603.1 AtuA-related protein -
  E5Z46_RS10990 (E5Z46_10985) ceuB 2112414..2113361 (+) 948 WP_013145615.1 ABC transporter permease Machinery gene
  E5Z46_RS10995 (E5Z46_10990) - 2113354..2114304 (+) 951 WP_013145614.1 iron chelate uptake ABC transporter family permease subunit -
  E5Z46_RS11000 (E5Z46_10995) - 2114298..2115053 (+) 756 WP_015374606.1 ABC transporter ATP-binding protein -
  E5Z46_RS11005 (E5Z46_11000) - 2115321..2116280 (+) 960 WP_033025196.1 siderophore ABC transporter substrate-binding protein -
  E5Z46_RS11010 (E5Z46_11005) - 2116319..2116879 (-) 561 WP_033025198.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34572.48 Da        Isoelectric Point: 9.4681

>NTDB_id=356000 E5Z46_RS10990 WP_013145615.1 2112414..2113361(+) (ceuB) [Geobacillus kaustophilus NBRC 102445]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFAGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAIFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGVFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=356000 E5Z46_RS10990 WP_013145615.1 2112414..2113361(+) (ceuB) [Geobacillus kaustophilus NBRC 102445]
ATGAAAAAATGGATGGTGCTTCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGTGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGAGGCTCATCAGCATTCTGATCGCCG
GGTCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTTGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGCGGGGACGCTGCTGTTTATGACGGTTTTGGATCGTGTGAAGTACAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCTGTCACGACGTTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGACGTTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACTGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATTGTCACGATGTATTATGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
ATTTGGCGCTTTGTTTGTGCTAATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCGATCGGCTTGA
CGGTTGGAGTAATCGGAAGCGGTGTCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483

Multiple sequence alignment