Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAMTA208_RS17940 Genome accession   NC_017188
Coordinates   3533069..3534199 (-) Length   376 a.a.
NCBI ID   WP_014471144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3528069..3539199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS17905 (BAMTA208_18550) - 3528208..3528849 (-) 642 WP_013353893.1 NAD(P)-dependent oxidoreductase -
  BAMTA208_RS17910 (BAMTA208_18555) - 3528914..3529318 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  BAMTA208_RS17915 (BAMTA208_18560) ureC 3529460..3531169 (-) 1710 WP_013353894.1 urease subunit alpha -
  BAMTA208_RS17920 (BAMTA208_18565) ureB 3531166..3531540 (-) 375 WP_013353895.1 urease subunit beta -
  BAMTA208_RS17925 (BAMTA208_18570) ureA 3531537..3531854 (-) 318 WP_013353896.1 urease subunit gamma -
  BAMTA208_RS17930 (BAMTA208_18575) - 3532206..3532394 (-) 189 WP_014472339.1 CsbD family protein -
  BAMTA208_RS17935 (BAMTA208_18580) - 3532468..3532947 (-) 480 WP_014471143.1 hypothetical protein -
  BAMTA208_RS17940 (BAMTA208_18585) rapC 3533069..3534199 (-) 1131 WP_014471144.1 tetratricopeptide repeat protein Regulator
  BAMTA208_RS17945 (BAMTA208_18590) moaA 3534385..3535410 (-) 1026 WP_014471145.1 GTP 3',8-cyclase MoaA -
  BAMTA208_RS17950 (BAMTA208_18595) fdhD 3535428..3536216 (-) 789 WP_013353899.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BAMTA208_RS21085 (BAMTA208_18600) - 3536311..3536475 (-) 165 WP_014471146.1 hypothetical protein -
  BAMTA208_RS17955 (BAMTA208_18605) - 3536561..3537241 (-) 681 WP_014471147.1 VWA domain-containing protein -
  BAMTA208_RS17960 (BAMTA208_18610) - 3537551..3538240 (-) 690 WP_013353901.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4460

>NTDB_id=35598 BAMTA208_RS17940 WP_014471144.1 3533069..3534199(-) (rapC) [Bacillus amyloliquefaciens TA208]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYVKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=35598 BAMTA208_RS17940 WP_014471144.1 3533069..3534199(-) (rapC) [Bacillus amyloliquefaciens TA208]
ATGACCGCATACGAGATTCCGTCATCTCAGGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTTACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACAGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTTAAGATGTCTGAAGTTTTTTATGTCATGAAACAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATATGTAAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTTATCTC
AGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGAGCATTTAGATGAAGCGCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGTCTGATTGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCACCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGATTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.431
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402

Multiple sequence alignment